Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNORA8.3-201ENST00000384679 139 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 MIR526A2-201ENST00000390198 65 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 AC244636.1-201ENST00000421152 228 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 RPL23AP6-201ENST00000446637 472 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 AL138752.1-201ENST00000452964 351 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 RNU6-437P-201ENST00000459408 95 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.22□□□□□ -2.05
SMARCA1P28370 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.22□□□□□ -2.05
SMARCA1P28370 MIR4299-201ENST00000577899 72 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.22□□□□□ -2.05
SMARCA1P28370 AC004792.1-201ENST00000614523 137 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
SMARCA1P28370 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.21□□□□□ -2.06
SMARCA1P28370 SNORA1B-201ENST00000362535 133 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 Y_RNA.203-201ENST00000364106 102 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 SNORA63D-201ENST00000364359 132 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 RNU6-482P-201ENST00000391068 107 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 MIR1289-2-201ENST00000408360 111 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 Y_RNA.793-201ENST00000411222 111 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 COX6CP10-201ENST00000416832 224 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 RNU7-94P-201ENST00000459576 63 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 RNU6-548P-201ENST00000517083 115 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 AC022559.1-201ENST00000520905 205 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 MIR4724-201ENST00000579485 89 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 Z83818.1-201ENST00000603584 150 ntBASIC2.21□□□□□ -2.06
SMARCA1P28370 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.21□□□□□ -2.06
SMARCA1P28370 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.21□□□□□ -2.06
SMARCA1P28370 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
SMARCA1P28370 RNU6-112P-201ENST00000363599 104 ntBASIC2.2□□□□□ -2.06
SMARCA1P28370 RNU6-296P-201ENST00000384608 107 ntBASIC2.2□□□□□ -2.06
SMARCA1P28370 RNU6-381P-201ENST00000391259 108 ntBASIC2.2□□□□□ -2.06
SMARCA1P28370 Y_RNA.621-201ENST00000411065 96 ntBASIC2.2□□□□□ -2.06
SMARCA1P28370 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.2□□□□□ -2.06
SMARCA1P28370 RPL23AP42-201ENST00000471152 471 ntBASIC2.2□□□□□ -2.06
SMARCA1P28370 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.2□□□□□ -2.06
SMARCA1P28370 SCARNA8-201ENST00000515924 131 ntBASIC2.2□□□□□ -2.06
SMARCA1P28370 AC015712.3-201ENST00000559380 164 ntBASIC2.2□□□□□ -2.06
SMARCA1P28370 uc_338.20-201ENST00000621563 178 ntBASIC2.2□□□□□ -2.06
SMARCA1P28370 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
SMARCA1P28370 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
SMARCA1P28370 RNU6-1020P-201ENST00000363684 107 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 MIR676-201ENST00000390702 67 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 RNU11-5P-201ENST00000391216 129 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 RNA5SP100-201ENST00000410903 110 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 RNA5SP59-201ENST00000410922 110 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 Z98949.2-201ENST00000440996 144 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 RNA5SP57-201ENST00000459463 123 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 SNORA31.10-201ENST00000516482 106 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 RNU6-453P-201ENST00000516819 85 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
SMARCA1P28370 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.19□□□□□ -2.06
SMARCA1P28370 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.19□□□□□ -2.06
SMARCA1P28370 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
SMARCA1P28370 MIR367-201ENST00000362299 68 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 Y_RNA.229-201ENST00000364347 113 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 SNORA4.2-201ENST00000365313 147 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 RNU4-17P-201ENST00000365598 141 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 RNA5SP247-201ENST00000411181 105 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.18□□□□□ -2.06
SMARCA1P28370 AC009310.1-201ENST00000414414 451 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 AC245047.3-201ENST00000429428 127 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 AL591806.2-201ENST00000433122 173 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 RPL23AP63-201ENST00000498752 471 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 RNU6-182P-201ENST00000516970 105 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 RNA5SP437-201ENST00000517249 129 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 AL358944.1-201ENST00000528537 144 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 MIR5688-201ENST00000580619 83 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 MIR8054-201ENST00000620877 86 ntBASIC2.18□□□□□ -2.06
SMARCA1P28370 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SMARCA1P28370 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
SMARCA1P28370 RNU6-1209P-201ENST00000363655 107 ntBASIC2.17□□□□□ -2.06
SMARCA1P28370 Y_RNA.796-201ENST00000364268 102 ntBASIC2.17□□□□□ -2.06
SMARCA1P28370 Y_RNA.799-201ENST00000364992 102 ntBASIC2.17□□□□□ -2.06
SMARCA1P28370 AL049830.1-201ENST00000468034 425 ntBASIC2.17□□□□□ -2.06
SMARCA1P28370 AP002004.2-201ENST00000531656 154 ntBASIC2.17□□□□□ -2.06
SMARCA1P28370 AP002392.1-201ENST00000537692 208 ntBASIC2.17□□□□□ -2.06
SMARCA1P28370 SNRPGP19-201ENST00000603826 189 ntBASIC2.17□□□□□ -2.06
SMARCA1P28370 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
SMARCA1P28370 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.16□□□□□ -2.06
SMARCA1P28370 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
SMARCA1P28370 RNU4-41P-201ENST00000364426 143 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 Y_RNA.238-201ENST00000364441 102 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 RNA5SP138-201ENST00000365098 114 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 Y_RNA.435-201ENST00000384095 112 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 Y_RNA.571-201ENST00000384753 98 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 MIR520A-201ENST00000384862 85 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 MIR562-201ENST00000384894 95 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
SMARCA1P28370 SNORA12.1-201ENST00000390873 148 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 RNU6-440P-201ENST00000390882 105 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 SNORA26.9-201ENST00000391322 122 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 RNA5SP338-201ENST00000410495 85 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 HSPE1P9-201ENST00000440046 311 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 AC069257.2-201ENST00000441819 155 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.16□□□□□ -2.06
SMARCA1P28370 AC245047.8-201ENST00000456455 284 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 RNU7-120P-201ENST00000459334 63 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 333 ms