Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.95□□□□□ -2.26
BDNFP23560 Y_RNA.122-201ENST00000363331 96 ntBASIC0.94□□□□□ -2.26
BDNFP23560 RNU6-1040P-201ENST00000383974 107 ntBASIC0.94□□□□□ -2.26
BDNFP23560 Y_RNA.505-201ENST00000384489 102 ntBASIC0.94□□□□□ -2.26
BDNFP23560 Y_RNA.570-201ENST00000384750 101 ntBASIC0.94□□□□□ -2.26
BDNFP23560 SNORA25.10-201ENST00000515926 124 ntBASIC0.94□□□□□ -2.26
BDNFP23560 SNORD116.3-201ENST00000517176 78 ntBASIC0.94□□□□□ -2.26
BDNFP23560 AC006600.1-201ENST00000572529 153 ntBASIC0.94□□□□□ -2.26
BDNFP23560 MIR2681-201ENST00000581814 105 ntBASIC0.94□□□□□ -2.26
BDNFP23560 POLR3GP1-201ENST00000594073 261 ntBASIC0.94□□□□□ -2.26
BDNFP23560 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.93□□□□□ -2.26
BDNFP23560 SNORD111-201ENST00000408139 94 ntBASIC0.93□□□□□ -2.26
BDNFP23560 MTCO2P27-201ENST00000420740 428 ntBASIC0.93□□□□□ -2.26
BDNFP23560 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.93□□□□□ -2.26
BDNFP23560 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.93□□□□□ -2.26
BDNFP23560 AP003716.2-201ENST00000528260 108 ntBASIC0.93□□□□□ -2.26
BDNFP23560 AC109810.1-201ENST00000534066 224 ntBASIC0.93□□□□□ -2.26
BDNFP23560 AC131055.1-201ENST00000584626 316 ntBASIC0.93□□□□□ -2.26
BDNFP23560 RPS29P30-201ENST00000600975 111 ntBASIC0.93□□□□□ -2.26
BDNFP23560 AL353765.1-201ENST00000605514 183 ntBASIC0.93□□□□□ -2.26
BDNFP23560 AC010205.1-201ENST00000616668 449 ntBASIC0.93□□□□□ -2.26
BDNFP23560 Y_RNA.118-201ENST00000363300 101 ntBASIC0.92□□□□□ -2.26
BDNFP23560 RNY3P11-201ENST00000364153 102 ntBASIC0.92□□□□□ -2.26
BDNFP23560 SNORD50B-201ENST00000364995 70 ntBASIC0.92□□□□□ -2.26
BDNFP23560 Y_RNA.355-201ENST00000365462 98 ntBASIC0.92□□□□□ -2.26
BDNFP23560 RNU6-442P-201ENST00000383968 104 ntBASIC0.92□□□□□ -2.26
BDNFP23560 Y_RNA.526-201ENST00000384572 110 ntBASIC0.92□□□□□ -2.26
BDNFP23560 Y_RNA.599-201ENST00000410489 109 ntBASIC0.92□□□□□ -2.26
BDNFP23560 RNU6-994P-201ENST00000410507 111 ntBASIC0.92□□□□□ -2.26
BDNFP23560 AC113410.1-201ENST00000505029 247 ntBASIC0.92□□□□□ -2.26
BDNFP23560 RNU7-41P-201ENST00000515917 61 ntBASIC0.92□□□□□ -2.26
BDNFP23560 RNU6-1110P-201ENST00000516462 101 ntBASIC0.92□□□□□ -2.26
BDNFP23560 AL355073.2-201ENST00000612106 557 ntBASIC0.92□□□□□ -2.26
BDNFP23560 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.92□□□□□ -2.26
BDNFP23560 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
BDNFP23560 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
BDNFP23560 Y_RNA.368-201ENST00000365547 113 ntBASIC0.91□□□□□ -2.26
BDNFP23560 MIR559-201ENST00000385188 96 ntBASIC0.91□□□□□ -2.26
BDNFP23560 RNY4P36-201ENST00000391116 96 ntBASIC0.91□□□□□ -2.26
BDNFP23560 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.91□□□□□ -2.26
BDNFP23560 snoU13.25-201ENST00000458945 104 ntBASIC0.91□□□□□ -2.26
BDNFP23560 snoU13.18-201ENST00000459483 104 ntBASIC0.91□□□□□ -2.26
BDNFP23560 SNORA20.3-201ENST00000516880 132 ntBASIC0.91□□□□□ -2.26
BDNFP23560 RNU6-699P-201ENST00000517081 110 ntBASIC0.91□□□□□ -2.26
BDNFP23560 AC005730.3-201ENST00000583067 366 ntBASIC0.91□□□□□ -2.26
BDNFP23560 SNORA4-201ENST00000584302 138 ntBASIC0.91□□□□□ -2.26
BDNFP23560 AC091925.1-201ENST00000623204 462 ntBASIC0.91□□□□□ -2.26
BDNFP23560 AC138305.3-201ENST00000624988 240 ntBASIC0.91□□□□□ -2.26
BDNFP23560 AC099654.14-201ENST00000638599 341 ntBASIC0.91□□□□□ -2.26
BDNFP23560 SNORA25.3-201ENST00000363205 127 ntBASIC0.9□□□□□ -2.27
BDNFP23560 Y_RNA.142-201ENST00000363491 102 ntBASIC0.9□□□□□ -2.27
BDNFP23560 Y_RNA.172-201ENST00000363765 102 ntBASIC0.9□□□□□ -2.27
BDNFP23560 Y_RNA.203-201ENST00000364106 102 ntBASIC0.9□□□□□ -2.27
BDNFP23560 Y_RNA.331-201ENST00000365267 102 ntBASIC0.9□□□□□ -2.27
BDNFP23560 MIR146A-201ENST00000385201 99 ntBASIC0.9□□□□□ -2.27
BDNFP23560 RNU6-1248P-201ENST00000391096 64 ntBASIC0.9□□□□□ -2.27
BDNFP23560 AC023827.1-201ENST00000569247 97 ntBASIC0.9□□□□□ -2.27
BDNFP23560 AL078603.1-201ENST00000603824 313 ntBASIC0.9□□□□□ -2.27
BDNFP23560 FAM71BP1-201ENST00000604431 523 ntBASIC0.9□□□□□ -2.27
BDNFP23560 AP003357.1-201ENST00000604497 148 ntBASIC0.9□□□□□ -2.27
BDNFP23560 AC011373.1-201ENST00000607270 237 ntBASIC0.9□□□□□ -2.27
BDNFP23560 AC106800.4-201ENST00000614905 153 ntBASIC0.9□□□□□ -2.27
BDNFP23560 MIR6788-201ENST00000618842 66 ntBASIC0.9□□□□□ -2.27
BDNFP23560 AC008133.2-201ENST00000624540 351 ntBASIC0.9□□□□□ -2.27
BDNFP23560 Y_RNA.39-201ENST00000362620 98 ntBASIC0.89□□□□□ -2.27
BDNFP23560 MIR1185-1-201ENST00000408598 86 ntBASIC0.89□□□□□ -2.27
BDNFP23560 MIR548J-201ENST00000408833 112 ntBASIC0.89□□□□□ -2.27
BDNFP23560 RNU6-1304P-201ENST00000411374 106 ntBASIC0.89□□□□□ -2.27
BDNFP23560 AC006461.1-201ENST00000412637 326 ntBASIC0.89□□□□□ -2.27
BDNFP23560 AC138393.2-201ENST00000414742 246 ntBASIC0.89□□□□□ -2.27
BDNFP23560 AL606490.4-201ENST00000423117 127 ntBASIC0.89□□□□□ -2.27
BDNFP23560 AC005534.2-201ENST00000431047 433 ntBASIC0.89□□□□□ -2.27
BDNFP23560 MIR5188-201ENST00000583467 113 ntBASIC0.89□□□□□ -2.27
BDNFP23560 MIR7111-201ENST00000619751 72 ntBASIC0.89□□□□□ -2.27
BDNFP23560 MIR4251-201ENST00000635819 61 ntBASIC0.89□□□□□ -2.27
BDNFP23560 RNY1P14-201ENST00000384426 108 ntBASIC0.88□□□□□ -2.27
BDNFP23560 MIR100-201ENST00000385259 80 ntBASIC0.88□□□□□ -2.27
BDNFP23560 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.88□□□□□ -2.27
BDNFP23560 RPL23AP54-201ENST00000495129 419 ntBASIC0.88□□□□□ -2.27
BDNFP23560 RN7SKP164-201ENST00000516138 266 ntBASIC0.88□□□□□ -2.27
BDNFP23560 RNA5SP220-201ENST00000516298 104 ntBASIC0.88□□□□□ -2.27
BDNFP23560 MIR4423-201ENST00000580922 80 ntBASIC0.88□□□□□ -2.27
BDNFP23560 AL121655.1-201ENST00000605811 308 ntBASIC0.88□□□□□ -2.27
BDNFP23560 AC068700.1-201ENST00000565862 3754 ntBASIC0.87□□□□□ -2.27
BDNFP23560 Y_RNA.310-201ENST00000365063 113 ntBASIC0.87□□□□□ -2.27
BDNFP23560 RNU6-42P-201ENST00000384165 107 ntBASIC0.87□□□□□ -2.27
BDNFP23560 RNU7-110P-201ENST00000516891 62 ntBASIC0.87□□□□□ -2.27
BDNFP23560 AL080274.1-201ENST00000605565 220 ntBASIC0.87□□□□□ -2.27
BDNFP23560 MIR4272-201ENST00000635924 64 ntBASIC0.87□□□□□ -2.27
BDNFP23560 Y_RNA.70-201ENST00000362886 110 ntBASIC0.86□□□□□ -2.27
BDNFP23560 SNORD113.3-201ENST00000364630 78 ntBASIC0.86□□□□□ -2.27
BDNFP23560 RNU6-21P-201ENST00000384710 107 ntBASIC0.86□□□□□ -2.27
BDNFP23560 SNORD89-201ENST00000390981 114 ntBASIC0.86□□□□□ -2.27
BDNFP23560 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.86□□□□□ -2.27
BDNFP23560 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.86□□□□□ -2.27
BDNFP23560 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.86□□□□□ -2.27
BDNFP23560 SCARNA8-201ENST00000515924 131 ntBASIC0.86□□□□□ -2.27
BDNFP23560 MIR2115-201ENST00000516657 100 ntBASIC0.86□□□□□ -2.27
BDNFP23560 CYP3A137P-201ENST00000562436 69 ntBASIC0.86□□□□□ -2.27
BDNFP23560 AC127455.1-201ENST00000565496 145 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms