Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNU6-1237P-201ENST00000384777 107 ntBASIC0.37□□□□□ -2.35
USF1P22415 RNU2-54P-201ENST00000410299 190 ntBASIC0.37□□□□□ -2.35
USF1P22415 MTND4P28-201ENST00000426217 387 ntBASIC0.37□□□□□ -2.35
USF1P22415 MTND3P10-201ENST00000450967 341 ntBASIC0.37□□□□□ -2.35
USF1P22415 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.37□□□□□ -2.35
USF1P22415 AC105313.1-201ENST00000509121 353 ntBASIC0.37□□□□□ -2.35
USF1P22415 AC240442.1-201ENST00000616055 283 ntBASIC0.37□□□□□ -2.35
USF1P22415 MIR6516-201ENST00000630554 81 ntBASIC0.37□□□□□ -2.35
USF1P22415 MIR4251-201ENST00000635819 61 ntBASIC0.37□□□□□ -2.35
USF1P22415 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
USF1P22415 Y_RNA.30-201ENST00000362572 97 ntBASIC0.36□□□□□ -2.35
USF1P22415 Y_RNA.85-201ENST00000363014 111 ntBASIC0.36□□□□□ -2.35
USF1P22415 Y_RNA.370-201ENST00000365589 108 ntBASIC0.36□□□□□ -2.35
USF1P22415 Y_RNA.404-201ENST00000383978 102 ntBASIC0.36□□□□□ -2.35
USF1P22415 SNORA72-201ENST00000384339 132 ntBASIC0.36□□□□□ -2.35
USF1P22415 MIR1302-7-201ENST00000408841 72 ntBASIC0.36□□□□□ -2.35
USF1P22415 RNA5SP222-201ENST00000411039 105 ntBASIC0.36□□□□□ -2.35
USF1P22415 MTND3P8-201ENST00000412909 339 ntBASIC0.36□□□□□ -2.35
USF1P22415 AC116353.2-201ENST00000505332 712 ntBASIC0.36□□□□□ -2.35
USF1P22415 RN7SKP12-201ENST00000516275 143 ntBASIC0.36□□□□□ -2.35
USF1P22415 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.36□□□□□ -2.35
USF1P22415 AC055872.1-201ENST00000570978 278 ntBASIC0.36□□□□□ -2.35
USF1P22415 MIR4300-201ENST00000581016 96 ntBASIC0.36□□□□□ -2.35
USF1P22415 AC104695.3-201ENST00000604052 296 ntBASIC0.36□□□□□ -2.35
USF1P22415 AL109933.3-201ENST00000619095 188 ntBASIC0.36□□□□□ -2.35
USF1P22415 MIR1-1-201ENST00000362147 71 ntBASIC0.35□□□□□ -2.35
USF1P22415 Y_RNA.101-201ENST00000363154 102 ntBASIC0.35□□□□□ -2.35
USF1P22415 Y_RNA.172-201ENST00000363765 102 ntBASIC0.35□□□□□ -2.35
USF1P22415 RNU6-654P-201ENST00000364373 107 ntBASIC0.35□□□□□ -2.35
USF1P22415 Y_RNA.339-201ENST00000365325 102 ntBASIC0.35□□□□□ -2.35
USF1P22415 SNORA2B-201ENST00000384583 137 ntBASIC0.35□□□□□ -2.35
USF1P22415 SNORA69.1-201ENST00000390904 137 ntBASIC0.35□□□□□ -2.35
USF1P22415 RNU6-613P-201ENST00000410412 108 ntBASIC0.35□□□□□ -2.35
USF1P22415 SNRPGP10-201ENST00000432323 225 ntBASIC0.35□□□□□ -2.35
USF1P22415 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.35□□□□□ -2.35
USF1P22415 FCF1P4-201ENST00000448326 183 ntBASIC0.35□□□□□ -2.35
USF1P22415 CHEK2P4-201ENST00000450340 246 ntBASIC0.35□□□□□ -2.35
USF1P22415 AC011352.1-201ENST00000512300 793 ntBASIC0.35□□□□□ -2.35
USF1P22415 RNU6-720P-201ENST00000516363 108 ntBASIC0.35□□□□□ -2.35
USF1P22415 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.35□□□□□ -2.35
USF1P22415 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.35□□□□□ -2.35
USF1P22415 RNU6-324P-201ENST00000363957 106 ntBASIC0.34□□□□□ -2.36
USF1P22415 RNU6-99P-201ENST00000364721 107 ntBASIC0.34□□□□□ -2.36
USF1P22415 Y_RNA.368-201ENST00000365547 113 ntBASIC0.34□□□□□ -2.36
USF1P22415 SNORA36.2-201ENST00000384004 127 ntBASIC0.34□□□□□ -2.36
USF1P22415 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.34□□□□□ -2.36
USF1P22415 AC005176.2-201ENST00000596933 147 ntBASIC0.34□□□□□ -2.36
USF1P22415 AL355073.2-201ENST00000612106 557 ntBASIC0.34□□□□□ -2.36
USF1P22415 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
USF1P22415 Y_RNA.86-201ENST00000363020 111 ntBASIC0.33□□□□□ -2.36
USF1P22415 Y_RNA.88-201ENST00000363029 99 ntBASIC0.33□□□□□ -2.36
USF1P22415 SNORD14E-201ENST00000364009 85 ntBASIC0.33□□□□□ -2.36
USF1P22415 RNU6-926P-201ENST00000384075 107 ntBASIC0.33□□□□□ -2.36
USF1P22415 Y_RNA.436-201ENST00000384097 102 ntBASIC0.33□□□□□ -2.36
USF1P22415 SNORD115-47-201ENST00000391226 86 ntBASIC0.33□□□□□ -2.36
USF1P22415 SNORA75.4-201ENST00000391278 119 ntBASIC0.33□□□□□ -2.36
USF1P22415 MIR1197-201ENST00000408818 88 ntBASIC0.33□□□□□ -2.36
USF1P22415 Y_RNA.592-201ENST00000410274 109 ntBASIC0.33□□□□□ -2.36
USF1P22415 RNA5SP127-201ENST00000411051 133 ntBASIC0.33□□□□□ -2.36
USF1P22415 SNORA62.5-201ENST00000516634 120 ntBASIC0.33□□□□□ -2.36
USF1P22415 MIR2115-201ENST00000516657 100 ntBASIC0.33□□□□□ -2.36
USF1P22415 MIR548AR-201ENST00000582191 57 ntBASIC0.33□□□□□ -2.36
USF1P22415 RNU6-623P-201ENST00000363143 105 ntBASIC0.32□□□□□ -2.36
USF1P22415 Y_RNA.148-201ENST00000363557 117 ntBASIC0.32□□□□□ -2.36
USF1P22415 Y_RNA.168-201ENST00000363740 102 ntBASIC0.32□□□□□ -2.36
USF1P22415 SNORD38C-201ENST00000384381 69 ntBASIC0.32□□□□□ -2.36
USF1P22415 Y_RNA.577-201ENST00000384794 101 ntBASIC0.32□□□□□ -2.36
USF1P22415 RNU6-192P-201ENST00000391253 100 ntBASIC0.32□□□□□ -2.36
USF1P22415 RNU6-177P-201ENST00000411257 104 ntBASIC0.32□□□□□ -2.36
USF1P22415 AC093534.1-201ENST00000504977 132 ntBASIC0.32□□□□□ -2.36
USF1P22415 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.32□□□□□ -2.36
USF1P22415 RNU6-436P-201ENST00000516171 114 ntBASIC0.32□□□□□ -2.36
USF1P22415 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.32□□□□□ -2.36
USF1P22415 RNU6-155P-201ENST00000516347 100 ntBASIC0.32□□□□□ -2.36
USF1P22415 RNU6-1012P-201ENST00000516606 109 ntBASIC0.32□□□□□ -2.36
USF1P22415 AL355375.2-201ENST00000574825 175 ntBASIC0.32□□□□□ -2.36
USF1P22415 AC087588.2-201ENST00000617667 426 ntBASIC0.32□□□□□ -2.36
USF1P22415 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
USF1P22415 Y_RNA.3-201ENST00000362331 103 ntBASIC0.31□□□□□ -2.36
USF1P22415 RNU6-396P-201ENST00000365369 105 ntBASIC0.31□□□□□ -2.36
USF1P22415 Y_RNA.446-201ENST00000384178 104 ntBASIC0.31□□□□□ -2.36
USF1P22415 RNU6-1199P-201ENST00000411249 104 ntBASIC0.31□□□□□ -2.36
USF1P22415 AC244023.1-201ENST00000426884 112 ntBASIC0.31□□□□□ -2.36
USF1P22415 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.31□□□□□ -2.36
USF1P22415 AC087685.1-201ENST00000587507 141 ntBASIC0.31□□□□□ -2.36
USF1P22415 AC060780.3-201ENST00000589464 80 ntBASIC0.31□□□□□ -2.36
USF1P22415 AC242498.1-201ENST00000604134 111 ntBASIC0.31□□□□□ -2.36
USF1P22415 RBM11P1-201ENST00000604951 799 ntBASIC0.31□□□□□ -2.36
USF1P22415 AC090517.2-201ENST00000614966 680 ntBASIC0.31□□□□□ -2.36
USF1P22415 AC243994.1-201ENST00000618627 109 ntBASIC0.31□□□□□ -2.36
USF1P22415 RNU6-626P-201ENST00000363354 107 ntBASIC0.3□□□□□ -2.36
USF1P22415 Y_RNA.251-201ENST00000364551 99 ntBASIC0.3□□□□□ -2.36
USF1P22415 RNU6-1323P-201ENST00000384025 107 ntBASIC0.3□□□□□ -2.36
USF1P22415 RNU6-20P-201ENST00000384106 107 ntBASIC0.3□□□□□ -2.36
USF1P22415 RNY3P4-201ENST00000384428 101 ntBASIC0.3□□□□□ -2.36
USF1P22415 MIR140-201ENST00000385282 100 ntBASIC0.3□□□□□ -2.36
USF1P22415 SNORD28B-201ENST00000390993 75 ntBASIC0.3□□□□□ -2.36
USF1P22415 RNA5SP95-201ENST00000410319 137 ntBASIC0.3□□□□□ -2.36
USF1P22415 RNU6-1156P-201ENST00000410365 100 ntBASIC0.3□□□□□ -2.36
USF1P22415 RNU6-710P-201ENST00000410424 105 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms