| CPA3 | P15088 | Y_RNA.804-201 | ENST00000615262 | 101 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| CPA3 | P15088 | AC007485.1-201 | ENST00000616755 | 206 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| CPA3 | P15088 | Y_RNA.112-201 | ENST00000363250 | 102 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | RNU4-38P-201 | ENST00000364472 | 129 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | RNU4-30P-201 | ENST00000410245 | 143 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | AL353614.1-201 | ENST00000445631 | 206 nt | TSL 5 BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | RNU7-21P-201 | ENST00000459430 | 62 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | RPL39P28-201 | ENST00000465655 | 155 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | HMGN1P10-201 | ENST00000474557 | 553 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | AC087343.1-201 | ENST00000477341 | 475 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | SNORA74.3-201 | ENST00000517108 | 154 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | AC024405.2-202 | ENST00000532731 | 184 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | AP003357.1-201 | ENST00000604497 | 148 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | AL133255.1-201 | ENST00000606374 | 441 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | AC006157.1-201 | ENST00000611750 | 366 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | DLX6-AS1_2.1-201 | ENST00000613701 | 207 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | TRAJ36-201 | ENST00000614481 | 58 nt | APPRIS P1 BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | uc_338.22-201 | ENST00000622722 | 187 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| CPA3 | P15088 | Y_RNA.143-201 | ENST00000363520 | 106 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.395-201 | ENST00000383945 | 109 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-321P-201 | ENST00000410912 | 106 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| CPA3 | P15088 | U8.20-201 | ENST00000459445 | 131 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC005840.1-201 | ENST00000498412 | 377 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU7-110P-201 | ENST00000516891 | 62 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AP001178.1-201 | ENST00000584679 | 268 nt | TSL 3 BASIC | 0.96 | □□□□□ -2.26 | | |
| CPA3 | P15088 | POLR3GP1-201 | ENST00000594073 | 261 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| CPA3 | P15088 | C9orf84-205 | ENST00000394779 | 5060 nt | APPRIS ALT2 TSL 2 BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC008163.1-202 | ENST00000636004 | 2889 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | U8.7-201 | ENST00000364940 | 136 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | snoU2-30.1-201 | ENST00000365012 | 70 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.439-201 | ENST00000384119 | 94 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR136-201 | ENST00000385207 | 82 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-131P-201 | ENST00000391144 | 107 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | U8.19-201 | ENST00000459095 | 133 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC092892.1-201 | ENST00000496067 | 327 nt | TSL 5 BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | UBL5P1-201 | ENST00000507979 | 193 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU7-41P-201 | ENST00000515917 | 61 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-475P-201 | ENST00000516073 | 104 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU7-115P-201 | ENST00000516433 | 55 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU7-116P-201 | ENST00000516940 | 62 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RRM2B-207 | ENST00000519962 | 201 nt | TSL 1 (best) BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC040926.1-201 | ENST00000530195 | 238 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC136932.1-201 | ENST00000574771 | 208 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC091895.1-201 | ENST00000624494 | 256 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| CPA3 | P15088 | DENND4A-209 | ENST00000635620 | 5887 nt | TSL 5 BASIC | 0.94 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-1084P-201 | ENST00000362498 | 107 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.203-201 | ENST00000364106 | 102 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.286-201 | ENST00000364813 | 102 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.471-201 | ENST00000384312 | 102 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC117454.1-201 | ENST00000491120 | 168 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC127455.1-201 | ENST00000565496 | 145 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| CPA3 | P15088 | U91328.3-201 | ENST00000608931 | 354 nt | TSL 3 BASIC | 0.94 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNA5SP264-201 | ENST00000363115 | 107 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.813-201 | ENST00000364639 | 102 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-392P-201 | ENST00000364926 | 101 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | SNORD42.2-201 | ENST00000365570 | 69 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MT-TD-201 | ENST00000387419 | 68 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR1302-11-201 | ENST00000408051 | 138 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR1302-9-201 | ENST00000408365 | 138 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR1302-10-201 | ENST00000408734 | 138 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MTATP6P23-201 | ENST00000440153 | 476 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC017015.2-201 | ENST00000497946 | 376 nt | TSL 2 BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR4781-201 | ENST00000585250 | 76 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR1302-2-201 | ENST00000607096 | 138 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.796-201 | ENST00000364268 | 102 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU4-50P-201 | ENST00000364361 | 141 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.799-201 | ENST00000364992 | 102 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.526-201 | ENST00000384572 | 110 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR1185-1-201 | ENST00000408598 | 86 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU2-14P-201 | ENST00000411053 | 191 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | HMGN2P32-201 | ENST00000444648 | 269 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MTND4P19-201 | ENST00000446659 | 478 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | NDUFA4P2-201 | ENST00000489989 | 244 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | SNORA18.7-201 | ENST00000516910 | 131 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AC104211.3-201 | ENST00000518861 | 270 nt | TSL 3 BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR4764-201 | ENST00000580680 | 88 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR4661-201 | ENST00000582720 | 75 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR548AY-201 | ENST00000617669 | 107 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| CPA3 | P15088 | C9orf84-204 | ENST00000394777 | 4955 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | SENP7-201 | ENST00000314261 | 4736 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.4-201 | ENST00000362333 | 112 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.31-201 | ENST00000362574 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-1209P-201 | ENST00000363655 | 107 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.164-201 | ENST00000363709 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-1048P-201 | ENST00000364054 | 107 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-801P-201 | ENST00000364087 | 105 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | SNORD114-24-201 | ENST00000365029 | 72 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | SNORD14.1-201 | ENST00000365609 | 90 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.383-201 | ENST00000383855 | 97 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.419-201 | ENST00000384041 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU6-21P-201 | ENST00000384710 | 107 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | MIR520C-201 | ENST00000385005 | 87 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.645-201 | ENST00000391229 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | SNRPGP14-201 | ENST00000435400 | 219 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | Y_RNA.639-201 | ENST00000458981 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU7-90P-201 | ENST00000459216 | 62 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | SNORD123-201 | ENST00000459473 | 70 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RPL23AP54-201 | ENST00000495129 | 419 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | AL117351.2-201 | ENST00000513571 | 157 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CPA3 | P15088 | RNU4ATAC11P-201 | ENST00000515939 | 126 nt | BASIC | 0.91 | □□□□□ -2.26 | | |