Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORD5.1-201ENST00000458800 75 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 SNORA18.4-201ENST00000516440 124 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 AC141557.1-201ENST00000540982 400 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 MIR5190-201ENST00000581537 80 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 U6.90-201ENST00000614007 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 U6.70-201ENST00000620287 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 SNORD114-5-201ENST00000362928 70 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 Y_RNA.116-201ENST00000363292 103 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 SNORD114-26-201ENST00000363543 72 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 Y_RNA.172-201ENST00000363765 102 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 RNU6-324P-201ENST00000363957 106 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 Y_RNA.358-201ENST00000365491 99 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 RNA5SP63-201ENST00000391225 112 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 RNU6-908P-201ENST00000410160 94 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 SNORD12B-201ENST00000410433 91 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 BTF3P11-201ENST00000426582 477 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 CHEK2P4-201ENST00000450340 246 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 RNU7-181P-201ENST00000517234 74 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-0.22□□□□□ -2.44
LIMS3P0CW19 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-0.22□□□□□ -2.44
LIMS3P0CW19 MIR3908-201ENST00000579798 126 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 AC008608.1-201ENST00000603910 127 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 AL391262.2-201ENST00000622466 494 ntBASIC-0.22□□□□□ -2.44
LIMS3P0CW19 RNU6-874P-201ENST00000362390 105 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 MIR125B2-201ENST00000385128 89 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 MIR610-201ENST00000385139 96 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 MIR518E-201ENST00000385252 88 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 RNA5SP496-201ENST00000391240 109 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 MIR1287-201ENST00000408492 90 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC-0.23□□□□□ -2.45
LIMS3P0CW19 SNRPGP14-201ENST00000435400 219 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 MIR18B-201ENST00000454574 71 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 RNU7-102P-201ENST00000458948 62 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 RPL23AP54-201ENST00000495129 419 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-0.23□□□□□ -2.45
LIMS3P0CW19 RNU6-408P-201ENST00000515910 100 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 RNA5SP268-201ENST00000516828 124 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC-0.23□□□□□ -2.45
LIMS3P0CW19 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-0.23□□□□□ -2.45
LIMS3P0CW19 MIR3942-201ENST00000585264 109 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 AC005014.2-201ENST00000607795 599 ntBASIC-0.23□□□□□ -2.45
LIMS3P0CW19 Y_RNA.122-201ENST00000363331 96 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 SNORA32.1-201ENST00000364514 115 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 RNU6-332P-201ENST00000391193 108 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 RNU6-192P-201ENST00000391253 100 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.24□□□□□ -2.45
LIMS3P0CW19 MTND3P21-201ENST00000433774 331 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-0.24□□□□□ -2.45
LIMS3P0CW19 RPL17P19-201ENST00000489069 552 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 AC010424.1-201ENST00000506336 297 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 RNU2-13P-201ENST00000515909 113 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 Y_RNA.676-201ENST00000516393 96 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 RNU6-1012P-201ENST00000516606 109 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 RN7SL793P-201ENST00000583259 296 ntBASIC-0.24□□□□□ -2.45
LIMS3P0CW19 RNU6-268P-201ENST00000364174 107 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 RNU6-483P-201ENST00000384088 108 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 RNY1P4-201ENST00000384595 115 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 MIR193B-201ENST00000384907 83 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 MIR644A-201ENST00000385262 94 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC-0.25□□□□□ -2.45
LIMS3P0CW19 AC006362.1-201ENST00000567392 174 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 SNORD92-201ENST00000585078 85 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 JPX_2.1-201ENST00000614161 69 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 MIR6128-201ENST00000615528 109 ntBASIC-0.25□□□□□ -2.45
LIMS3P0CW19 RNU6-451P-201ENST00000362921 107 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 SNORA36.1-201ENST00000363424 132 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 SNORA72.1-201ENST00000363485 129 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 RNY3P3-201ENST00000363816 102 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 DEFB108C-201ENST00000400154 252 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-0.26□□□□□ -2.45
LIMS3P0CW19 AC019235.1-201ENST00000503847 207 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 RNU6-864P-201ENST00000516256 108 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 RNU6-273P-201ENST00000516937 96 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 RNU6-448P-201ENST00000517052 107 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 MIR2355-201ENST00000517199 87 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 AC133485.4-201ENST00000561835 220 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 AC018638.8-201ENST00000588755 281 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 AC090582.1-201ENST00000636321 199 ntBASIC-0.26□□□□□ -2.45
LIMS3P0CW19 RNU6-1301P-201ENST00000362724 104 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 Y_RNA.203-201ENST00000364106 102 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 RNU6-302P-201ENST00000365249 107 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 RNU6-259P-201ENST00000383999 107 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 RNU6V-201ENST00000384105 107 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 RNU6-767P-201ENST00000384132 107 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 Y_RNA.517-201ENST00000384551 106 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 MIR1257-201ENST00000408490 117 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 RNU6-855P-201ENST00000410395 104 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 MTND2P9-201ENST00000422293 931 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 MTND1P17-201ENST00000448961 204 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 snoU13.16-201ENST00000459350 104 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 Y_RNA.704-201ENST00000516851 102 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 RNU7-116P-201ENST00000516940 62 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 RNU7-156P-201ENST00000517214 74 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 RPL23AP91-201ENST00000569211 455 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.27□□□□□ -2.45
LIMS3P0CW19 AL355297.3-201ENST00000604082 446 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 AC098679.4-201ENST00000624241 654 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 MIR3662-201ENST00000637030 95 ntBASIC-0.27□□□□□ -2.45
LIMS3P0CW19 AC010332.2-201ENST00000613083 1904 ntBASIC-0.28□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 183.3 ms