Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 Y_RNA.203-201ENST00000364106 102 ntBASIC1.03□□□□□ -2.24
VIMP08670 Y_RNA.813-201ENST00000364639 102 ntBASIC1.03□□□□□ -2.24
VIMP08670 Y_RNA.286-201ENST00000364813 102 ntBASIC1.03□□□□□ -2.24
VIMP08670 Y_RNA.383-201ENST00000383855 97 ntBASIC1.03□□□□□ -2.24
VIMP08670 Y_RNA.424-201ENST00000384063 103 ntBASIC1.03□□□□□ -2.24
VIMP08670 AC022028.1-201ENST00000412054 408 ntBASIC1.03□□□□□ -2.24
VIMP08670 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.03□□□□□ -2.24
VIMP08670 MTND4LP11-201ENST00000422184 280 ntBASIC1.03□□□□□ -2.24
VIMP08670 HMGN2P32-201ENST00000444648 269 ntBASIC1.03□□□□□ -2.24
VIMP08670 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.03□□□□□ -2.24
VIMP08670 MTND4P19-201ENST00000446659 478 ntBASIC1.03□□□□□ -2.24
VIMP08670 UBL5P1-201ENST00000507979 193 ntBASIC1.03□□□□□ -2.24
VIMP08670 RNU7-115P-201ENST00000516433 55 ntBASIC1.03□□□□□ -2.24
VIMP08670 SNORA18.7-201ENST00000516910 131 ntBASIC1.03□□□□□ -2.24
VIMP08670 SNORA74.3-201ENST00000517108 154 ntBASIC1.03□□□□□ -2.24
VIMP08670 AC127455.1-201ENST00000565496 145 ntBASIC1.03□□□□□ -2.24
VIMP08670 AC136932.1-201ENST00000574771 208 ntBASIC1.03□□□□□ -2.24
VIMP08670 SNORD114-21-201ENST00000606412 72 ntBASIC1.03□□□□□ -2.24
VIMP08670 MIR548AY-201ENST00000617669 107 ntBASIC1.03□□□□□ -2.24
VIMP08670 Y_RNA.31-201ENST00000362574 102 ntBASIC1.02□□□□□ -2.25
VIMP08670 SNORD42.2-201ENST00000365570 69 ntBASIC1.02□□□□□ -2.25
VIMP08670 Y_RNA.431-201ENST00000384086 102 ntBASIC1.02□□□□□ -2.25
VIMP08670 MIR520C-201ENST00000385005 87 ntBASIC1.02□□□□□ -2.25
VIMP08670 SNORA75.2-201ENST00000391138 150 ntBASIC1.02□□□□□ -2.25
VIMP08670 SNORA75.3-201ENST00000391231 150 ntBASIC1.02□□□□□ -2.25
VIMP08670 POLR2KP2-201ENST00000438155 177 ntBASIC1.02□□□□□ -2.25
VIMP08670 SNORD124-201ENST00000459577 104 ntBASIC1.02□□□□□ -2.25
VIMP08670 AC087343.1-201ENST00000477341 475 ntBASIC1.02□□□□□ -2.25
VIMP08670 SEPT14P8-201ENST00000508026 178 ntBASIC1.02□□□□□ -2.25
VIMP08670 RNU6-1046P-201ENST00000516538 107 ntBASIC1.02□□□□□ -2.25
VIMP08670 AC008163.1-202ENST00000636004 2889 ntBASIC1.02□□□□□ -2.25
VIMP08670 RNU4-80P-201ENST00000363200 141 ntBASIC1.01□□□□□ -2.25
VIMP08670 RNU6-969P-201ENST00000383900 105 ntBASIC1.01□□□□□ -2.25
VIMP08670 BTF3P4-201ENST00000418852 495 ntBASIC1.01□□□□□ -2.25
VIMP08670 Y_RNA.639-201ENST00000458981 102 ntBASIC1.01□□□□□ -2.25
VIMP08670 RNU7-21P-201ENST00000459430 62 ntBASIC1.01□□□□□ -2.25
VIMP08670 SNORD113-5-201ENST00000607261 78 ntBASIC1.01□□□□□ -2.25
VIMP08670 JPX_2.1-201ENST00000614161 69 ntBASIC1.01□□□□□ -2.25
VIMP08670 AC090971.5-201ENST00000621102 293 ntBASIC1.01□□□□□ -2.25
VIMP08670 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.01□□□□□ -2.25
VIMP08670 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC1□□□□□ -2.25
VIMP08670 MIR378A-201ENST00000362177 66 ntBASIC1□□□□□ -2.25
VIMP08670 RNU6-1048P-201ENST00000364054 107 ntBASIC1□□□□□ -2.25
VIMP08670 Y_RNA.445-201ENST00000384168 102 ntBASIC1□□□□□ -2.25
VIMP08670 Y_RNA.509-201ENST00000384506 99 ntBASIC1□□□□□ -2.25
VIMP08670 MIR15B-201ENST00000385045 98 ntBASIC1□□□□□ -2.25
VIMP08670 RNU6-482P-201ENST00000391068 107 ntBASIC1□□□□□ -2.25
VIMP08670 Y_RNA.645-201ENST00000391229 102 ntBASIC1□□□□□ -2.25
VIMP08670 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1□□□□□ -2.25
VIMP08670 RNU7-95P-201ENST00000459222 64 ntBASIC1□□□□□ -2.25
VIMP08670 RNU7-41P-201ENST00000515917 61 ntBASIC1□□□□□ -2.25
VIMP08670 RNU6-397P-201ENST00000516226 104 ntBASIC1□□□□□ -2.25
VIMP08670 AC124312.5-201ENST00000604451 268 ntBASIC1□□□□□ -2.25
VIMP08670 AL391987.6-201ENST00000305671 199 ntBASIC0.99□□□□□ -2.25
VIMP08670 RNA5SP264-201ENST00000363115 107 ntBASIC0.99□□□□□ -2.25
VIMP08670 RNU6-1209P-201ENST00000363655 107 ntBASIC0.99□□□□□ -2.25
VIMP08670 SNORD14E-201ENST00000364009 85 ntBASIC0.99□□□□□ -2.25
VIMP08670 Y_RNA.796-201ENST00000364268 102 ntBASIC0.99□□□□□ -2.25
VIMP08670 Y_RNA.799-201ENST00000364992 102 ntBASIC0.99□□□□□ -2.25
VIMP08670 RNU2-14P-201ENST00000411053 191 ntBASIC0.99□□□□□ -2.25
VIMP08670 PMCHL1-202ENST00000423102 261 ntBASIC0.99□□□□□ -2.25
VIMP08670 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC0.99□□□□□ -2.25
VIMP08670 RNU7-141P-201ENST00000459304 62 ntBASIC0.99□□□□□ -2.25
VIMP08670 SNORD123-201ENST00000459473 70 ntBASIC0.99□□□□□ -2.25
VIMP08670 AC015712.3-201ENST00000559380 164 ntBASIC0.99□□□□□ -2.25
VIMP08670 MIR4764-201ENST00000580680 88 ntBASIC0.99□□□□□ -2.25
VIMP08670 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.99□□□□□ -2.25
VIMP08670 SNORA25.3-201ENST00000363205 127 ntBASIC0.98□□□□□ -2.25
VIMP08670 SNORD113-8-201ENST00000363497 74 ntBASIC0.98□□□□□ -2.25
VIMP08670 RNU6-801P-201ENST00000364087 105 ntBASIC0.98□□□□□ -2.25
VIMP08670 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.98□□□□□ -2.25
VIMP08670 RNU7-90P-201ENST00000459216 62 ntBASIC0.98□□□□□ -2.25
VIMP08670 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.98□□□□□ -2.25
VIMP08670 AC136628.3-201ENST00000521868 290 ntBASIC0.98□□□□□ -2.25
VIMP08670 MIR376A1-201ENST00000616574 68 ntBASIC0.98□□□□□ -2.25
VIMP08670 Y_RNA.148-201ENST00000363557 117 ntBASIC0.97□□□□□ -2.25
VIMP08670 RNU6-450P-201ENST00000364654 107 ntBASIC0.97□□□□□ -2.25
VIMP08670 SNORD114-24-201ENST00000365029 72 ntBASIC0.97□□□□□ -2.25
VIMP08670 SNORA72.4-201ENST00000384174 132 ntBASIC0.97□□□□□ -2.25
VIMP08670 SNORA17.3-201ENST00000391159 129 ntBASIC0.97□□□□□ -2.25
VIMP08670 MIR1278-201ENST00000408753 81 ntBASIC0.97□□□□□ -2.25
VIMP08670 RNU4-62P-201ENST00000410125 130 ntBASIC0.97□□□□□ -2.25
VIMP08670 SNORA36B-201ENST00000410438 131 ntBASIC0.97□□□□□ -2.25
VIMP08670 Y_RNA.602-201ENST00000410535 92 ntBASIC0.97□□□□□ -2.25
VIMP08670 AC092473.1-201ENST00000441098 221 ntBASIC0.97□□□□□ -2.25
VIMP08670 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.97□□□□□ -2.25
VIMP08670 RNU6-437P-201ENST00000459408 95 ntBASIC0.97□□□□□ -2.25
VIMP08670 NDUFA4P2-201ENST00000489989 244 ntBASIC0.97□□□□□ -2.25
VIMP08670 RNU7-43P-201ENST00000516554 64 ntBASIC0.97□□□□□ -2.25
VIMP08670 Y_RNA.715-201ENST00000517082 110 ntBASIC0.97□□□□□ -2.25
VIMP08670 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.97□□□□□ -2.25
VIMP08670 MIR4300-201ENST00000581016 96 ntBASIC0.97□□□□□ -2.25
VIMP08670 AC007742.2-201ENST00000618226 398 ntBASIC0.97□□□□□ -2.25
VIMP08670 AC090574.1-201ENST00000623186 233 ntBASIC0.97□□□□□ -2.25
VIMP08670 AL442644.1-201ENST00000454390 3105 ntBASIC0.96□□□□□ -2.26
VIMP08670 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
VIMP08670 MIR103A2-201ENST00000362154 78 ntBASIC0.96□□□□□ -2.26
VIMP08670 Y_RNA.222-201ENST00000364264 102 ntBASIC0.96□□□□□ -2.26
VIMP08670 Y_RNA.330-201ENST00000365230 109 ntBASIC0.96□□□□□ -2.26
VIMP08670 Y_RNA.418-201ENST00000384029 102 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms