Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 RNU6-97P-201ENST00000363387 104 ntBASIC-1.14□□□□□ -2.59
APOBP04114 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.14□□□□□ -2.59
APOBP04114 MTND3P8-201ENST00000412909 339 ntBASIC-1.14□□□□□ -2.59
APOBP04114 RNU6-194P-201ENST00000363862 105 ntBASIC-1.15□□□□□ -2.59
APOBP04114 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC-1.15□□□□□ -2.59
APOBP04114 AL078596.1-201ENST00000624856 447 ntBASIC-1.15□□□□□ -2.59
APOBP04114 MIR548A2-201ENST00000384956 97 ntBASIC-1.15□□□□□ -2.59
APOBP04114 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC-1.15□□□□□ -2.59
APOBP04114 MTCO3P19-201ENST00000415864 321 ntBASIC-1.15□□□□□ -2.59
APOBP04114 MIR4637-201ENST00000582405 84 ntBASIC-1.15□□□□□ -2.59
APOBP04114 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC-1.15□□□□□ -2.59
APOBP04114 RNU6-511P-201ENST00000363496 107 ntBASIC-1.15□□□□□ -2.59
APOBP04114 RNU6-960P-201ENST00000364056 120 ntBASIC-1.15□□□□□ -2.59
APOBP04114 MIR190B-201ENST00000401119 79 ntBASIC-1.15□□□□□ -2.59
APOBP04114 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.15□□□□□ -2.59
APOBP04114 AL139418.1-201ENST00000613613 177 ntBASIC-1.15□□□□□ -2.59
APOBP04114 HMGN2P32-201ENST00000444648 269 ntBASIC-1.15□□□□□ -2.59
APOBP04114 USP9YP12-201ENST00000450481 570 ntBASIC-1.15□□□□□ -2.59
APOBP04114 RNU7-182P-201ENST00000459009 62 ntBASIC-1.15□□□□□ -2.59
APOBP04114 SNORD115-40-201ENST00000606510 82 ntBASIC-1.15□□□□□ -2.59
APOBP04114 MIR15A-201ENST00000607334 83 ntBASIC-1.15□□□□□ -2.59
APOBP04114 AC099654.8-201ENST00000637757 681 ntBASIC-1.15□□□□□ -2.59
APOBP04114 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.16□□□□□ -2.59
APOBP04114 SNORD38B-201ENST00000384690 67 ntBASIC-1.16□□□□□ -2.59
APOBP04114 RNU6-466P-201ENST00000391224 103 ntBASIC-1.16□□□□□ -2.59
APOBP04114 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC-1.16□□□□□ -2.59
APOBP04114 EEF1E1P1-201ENST00000446998 430 ntBASIC-1.16□□□□□ -2.59
APOBP04114 AC093899.1-201ENST00000457984 376 ntBASIC-1.16□□□□□ -2.59
APOBP04114 RNY4P37-201ENST00000516225 96 ntBASIC-1.16□□□□□ -2.59
APOBP04114 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC-1.16□□□□□ -2.59
APOBP04114 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-1.16□□□□□ -2.59
APOBP04114 RPS29P13-201ENST00000402041 169 ntBASIC-1.16□□□□□ -2.6
APOBP04114 AC026414.1-201ENST00000504046 698 ntBASIC-1.16□□□□□ -2.6
APOBP04114 RNU6-677P-201ENST00000516914 101 ntBASIC-1.16□□□□□ -2.6
APOBP04114 AC131281.1-201ENST00000522984 164 ntBASIC-1.16□□□□□ -2.6
APOBP04114 RNY1P2-201ENST00000364820 117 ntBASIC-1.16□□□□□ -2.6
APOBP04114 RNU6-1179P-201ENST00000384667 107 ntBASIC-1.16□□□□□ -2.6
APOBP04114 AC004386.2-201ENST00000441858 148 ntBASIC-1.16□□□□□ -2.6
APOBP04114 RNU6-1194P-201ENST00000516208 104 ntBASIC-1.16□□□□□ -2.6
APOBP04114 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-1.16□□□□□ -2.6
APOBP04114 Y_RNA.697-201ENST00000516776 113 ntBASIC-1.16□□□□□ -2.6
APOBP04114 AF250324.2-201ENST00000608299 610 ntBASIC-1.16□□□□□ -2.6
APOBP04114 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.16□□□□□ -2.6
APOBP04114 BX119904.4-201ENST00000424402 301 ntBASIC-1.17□□□□□ -2.6
APOBP04114 RNU7-67P-201ENST00000459003 62 ntBASIC-1.17□□□□□ -2.6
APOBP04114 AC026585.1-201ENST00000619582 524 ntBASIC-1.17□□□□□ -2.6
APOBP04114 AL049777.1-201ENST00000622740 518 ntBASIC-1.17□□□□□ -2.6
APOBP04114 Y_RNA.38-201ENST00000362617 102 ntBASIC-1.17□□□□□ -2.6
APOBP04114 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC-1.17□□□□□ -2.6
APOBP04114 Y_RNA.23-201ENST00000362496 106 ntBASIC-1.17□□□□□ -2.6
APOBP04114 RNA5SP20-201ENST00000515976 84 ntBASIC-1.17□□□□□ -2.6
APOBP04114 Y_RNA.714-201ENST00000517065 90 ntBASIC-1.17□□□□□ -2.6
APOBP04114 DISC2.1-201ENST00000612827 205 ntBASIC-1.17□□□□□ -2.6
APOBP04114 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.17□□□□□ -2.6
APOBP04114 SNORD115-25-201ENST00000362619 82 ntBASIC-1.18□□□□□ -2.6
APOBP04114 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC-1.18□□□□□ -2.6
APOBP04114 AC012467.1-201ENST00000607740 256 ntBASIC-1.18□□□□□ -2.6
APOBP04114 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.18□□□□□ -2.6
APOBP04114 SNORD115-35-201ENST00000365122 82 ntBASIC-1.18□□□□□ -2.6
APOBP04114 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.18□□□□□ -2.6
APOBP04114 AC073464.1-201ENST00000429823 534 ntBASIC-1.18□□□□□ -2.6
APOBP04114 Y_RNA.39-201ENST00000362620 98 ntBASIC-1.18□□□□□ -2.6
APOBP04114 RNU4-10P-201ENST00000364383 140 ntBASIC-1.18□□□□□ -2.6
APOBP04114 SNORA1.2-201ENST00000365189 134 ntBASIC-1.18□□□□□ -2.6
APOBP04114 MIR320B2-201ENST00000408479 138 ntBASIC-1.18□□□□□ -2.6
APOBP04114 MTCO3P8-201ENST00000453691 755 ntBASIC-1.18□□□□□ -2.6
APOBP04114 BNIP3P40-201ENST00000596017 556 ntBASIC-1.18□□□□□ -2.6
APOBP04114 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-1.18□□□□□ -2.6
APOBP04114 MTND5P42-201ENST00000637720 498 ntBASIC-1.18□□□□□ -2.6
APOBP04114 PIGPP3-201ENST00000425307 415 ntBASIC-1.18□□□□□ -2.6
APOBP04114 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC-1.18□□□□□ -2.6
APOBP04114 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.18□□□□□ -2.6
APOBP04114 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.18□□□□□ -2.6
APOBP04114 AC097460.3-201ENST00000623099 442 ntBASIC-1.18□□□□□ -2.6
APOBP04114 Y_RNA.539-201ENST00000384635 107 ntBASIC-1.19□□□□□ -2.6
APOBP04114 RNU6-1093P-201ENST00000391194 107 ntBASIC-1.19□□□□□ -2.6
APOBP04114 Y_RNA.617-201ENST00000410920 90 ntBASIC-1.19□□□□□ -2.6
APOBP04114 MTATP6P18-201ENST00000417994 673 ntBASIC-1.19□□□□□ -2.6
APOBP04114 RPL30P16-201ENST00000419341 429 ntBASIC-1.19□□□□□ -2.6
APOBP04114 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC-1.19□□□□□ -2.6
APOBP04114 RNU6-1116P-201ENST00000517269 99 ntBASIC-1.19□□□□□ -2.6
APOBP04114 POLR3GP1-201ENST00000594073 261 ntBASIC-1.19□□□□□ -2.6
APOBP04114 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.19□□□□□ -2.6
APOBP04114 AL390729.2-201ENST00000416137 156 ntBASIC-1.19□□□□□ -2.6
APOBP04114 AL512286.1-201ENST00000439244 400 ntBASIC-1.19□□□□□ -2.6
APOBP04114 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.19□□□□□ -2.6
APOBP04114 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-1.19□□□□□ -2.6
APOBP04114 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC-1.19□□□□□ -2.6
APOBP04114 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-1.19□□□□□ -2.6
APOBP04114 SNORD115-33-201ENST00000363723 82 ntBASIC-1.19□□□□□ -2.6
APOBP04114 SNORA27.3-201ENST00000364937 134 ntBASIC-1.19□□□□□ -2.6
APOBP04114 Y_RNA.323-201ENST00000365157 109 ntBASIC-1.19□□□□□ -2.6
APOBP04114 Y_RNA.482-201ENST00000384377 111 ntBASIC-1.19□□□□□ -2.6
APOBP04114 RNU2-9P-201ENST00000410194 145 ntBASIC-1.19□□□□□ -2.6
APOBP04114 RNU5A-5P-201ENST00000411054 116 ntBASIC-1.19□□□□□ -2.6
APOBP04114 AC060788.1-201ENST00000521318 469 ntBASIC-1.19□□□□□ -2.6
APOBP04114 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC-1.19□□□□□ -2.6
APOBP04114 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.19□□□□□ -2.6
APOBP04114 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC-1.19□□□□□ -2.6
APOBP04114 U6.114-201ENST00000636407 96 ntBASIC-1.19□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms