Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim9Q8C7M3 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
Trim9Q8C7M3 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim9Q8C7M3 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim9Q8C7M3 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim9Q8C7M3 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim9Q8C7M3 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Gm27704-201ENSMUST00000185094 107 ntBASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Gm33142-201ENSMUST00000193913 867 ntBASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim9Q8C7M3 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms