Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Trim27Q62158 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim27Q62158 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim27Q62158 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim27Q62158 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Trim27Q62158 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Gm1818-201ENSMUST00000169406 1184 ntBASIC19.71■□□□□ 0.75
Trim27Q62158 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.71■□□□□ 0.75
Trim27Q62158 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Trim27Q62158 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Trim27Q62158 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim27Q62158 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
Trim27Q62158 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trim27Q62158 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC19.7■□□□□ 0.74
Trim27Q62158 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
Trim27Q62158 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC19.7■□□□□ 0.74
Trim27Q62158 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC19.7■□□□□ 0.74
Trim27Q62158 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trim27Q62158 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trim27Q62158 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim27Q62158 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
Trim27Q62158 App-207ENSMUST00000227737 2827 ntBASIC19.7■□□□□ 0.74
Trim27Q62158 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC19.69■□□□□ 0.74
Trim27Q62158 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Prob1-201ENSMUST00000097619 3021 ntBASIC19.69■□□□□ 0.74
Trim27Q62158 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim27Q62158 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Ccdc166-201ENSMUST00000182172 2584 ntBASIC19.68■□□□□ 0.74
Trim27Q62158 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim27Q62158 Gm27357-201ENSMUST00000183754 135 ntBASIC19.68■□□□□ 0.74
Trim27Q62158 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.68■□□□□ 0.74
Trim27Q62158 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Gm16011-201ENSMUST00000121567 2662 ntBASIC19.68■□□□□ 0.74
Trim27Q62158 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim27Q62158 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trim27Q62158 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Trim27Q62158 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trim27Q62158 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC19.67■□□□□ 0.74
Trim27Q62158 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
Trim27Q62158 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms