Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 SNORA72-201ENST00000384339 132 ntBASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-1031P-201ENST00000384773 107 ntBASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 MIR499A-201ENST00000384903 122 ntBASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 AC019129.1-201ENST00000403786 261 ntBASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 AL445646.1-201ENST00000431784 216 ntBASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 AL135790.2-201ENST00000437701 267 ntBASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 AL049830.1-201ENST00000468034 425 ntBASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 POLR3GP1-201ENST00000594073 261 ntBASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
CCDC9Q9Y3X0 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 AL391987.6-201ENST00000305671 199 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 Y_RNA.515-201ENST00000384535 112 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 MIR30A-201ENST00000385092 71 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-321P-201ENST00000410912 106 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 RNA5SP489-201ENST00000410986 109 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 JTBP1-201ENST00000441314 247 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 SNORD127-201ENST00000458892 86 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 Y_RNA.680-201ENST00000516441 93 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 SCARNA16.3-201ENST00000516595 184 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 AP001282.2-201ENST00000616149 309 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 MIR8070-201ENST00000616510 88 ntBASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC9Q9Y3X0 Y_RNA.237-201ENST00000364439 102 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 SNORA72.4-201ENST00000384174 132 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 Y_RNA.483-201ENST00000384380 101 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 MIR489-201ENST00000384923 84 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 U8.19-201ENST00000459095 133 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-1023P-201ENST00000516137 106 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 MIR3128-201ENST00000581957 66 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 MIR548AY-201ENST00000617669 107 ntBASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC9Q9Y3X0 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 Y_RNA.14-201ENST00000362415 103 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 Y_RNA.122-201ENST00000363331 96 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 SNORA20.1-201ENST00000364790 130 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-1062P-201ENST00000383908 107 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 MT-TW-201ENST00000387382 68 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 RNA5SP482-201ENST00000391269 118 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 AC104332.1-201ENST00000440471 797 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 AC117454.1-201ENST00000491120 168 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 RNA5SP200-201ENST00000516360 103 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 AP003357.1-201ENST00000604497 148 ntBASIC2.85□□□□□ -1.95
CCDC9Q9Y3X0 Y_RNA.60-201ENST00000362831 98 ntBASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 RNU6-1080P-201ENST00000383982 107 ntBASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 RNU2-38P-201ENST00000410856 79 ntBASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 RPL39P38-201ENST00000467018 153 ntBASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 RNU7-115P-201ENST00000516433 55 ntBASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 SNORA27.4-201ENST00000516650 95 ntBASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 RNA5SP402-201ENST00000517148 110 ntBASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 AC024405.2-202ENST00000532731 184 ntBASIC2.84□□□□□ -1.95
CCDC9Q9Y3X0 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.96
CCDC9Q9Y3X0 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.117-201ENST00000363294 101 ntBASIC2.83□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-801P-201ENST00000364087 105 ntBASIC2.83□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.562-201ENST00000384695 113 ntBASIC2.83□□□□□ -1.96
CCDC9Q9Y3X0 RPL23AP54-201ENST00000495129 419 ntBASIC2.83□□□□□ -1.96
CCDC9Q9Y3X0 MIR3198-2-201ENST00000577868 80 ntBASIC2.83□□□□□ -1.96
CCDC9Q9Y3X0 AC021506.2-201ENST00000612354 169 ntBASIC2.83□□□□□ -1.96
CCDC9Q9Y3X0 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 MIR335-201ENST00000362173 94 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 SNORA25.9-201ENST00000365087 128 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.478-201ENST00000384358 107 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 RNU2-2P-201ENST00000410396 191 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 RNU7-141P-201ENST00000459304 62 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 MTND1P19-201ENST00000511780 315 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 AC127455.1-201ENST00000565496 145 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 AC098479.1-201ENST00000609225 154 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.783-201ENST00000613546 102 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 AL078604.3-201ENST00000615580 211 ntBASIC2.82□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-899P-201ENST00000363947 107 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-1048P-201ENST00000364054 107 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 U8.7-201ENST00000364940 136 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 DEFA7P-201ENST00000382676 285 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-662P-201ENST00000384253 104 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.477-201ENST00000384352 108 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.518-201ENST00000384552 113 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 MTCO2P33-201ENST00000402100 465 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 BTF3P4-201ENST00000418852 495 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 AL445685.2-201ENST00000422551 342 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 snoU13.9-201ENST00000458927 103 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 AC005840.1-201ENST00000498412 377 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 AC073349.3-201ENST00000617616 186 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 AC080100.1-201ENST00000624239 5356 ntBASIC2.81□□□□□ -1.96
CCDC9Q9Y3X0 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.44-201ENST00000362676 108 ntBASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-1272P-201ENST00000362776 107 ntBASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-457P-201ENST00000363999 107 ntBASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.796-201ENST00000364268 102 ntBASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 Y_RNA.799-201ENST00000364992 102 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms