Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RPS27P1-201ENST00000450552 247 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 RNVU1-2-201ENST00000516326 135 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.679-201ENST00000516416 91 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 AC024405.2-202ENST00000532731 184 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 uc_338.20-201ENST00000621563 178 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 AC068647.2-201ENST00000637380 353 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS4AQ9UN37 AC092881.1-201ENST00000638218 2733 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 AC134026.1-201ENST00000623249 2239 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
VPS4AQ9UN37 SNORA63D-201ENST00000364359 132 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.274-201ENST00000364714 101 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 SNORA72-201ENST00000384339 132 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 MIR1287-201ENST00000408492 90 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 RNA5SP233-201ENST00000459153 113 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 AC117454.1-201ENST00000491120 168 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 RNU6-138P-201ENST00000515952 107 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 RNA5SP364-201ENST00000516938 78 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 RNU6-341P-201ENST00000516973 96 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 AP005660.1-201ENST00000522972 293 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 AC100821.1-201ENST00000523153 2479 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS4AQ9UN37 AC100767.1-201ENST00000528178 123 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 AL358944.1-201ENST00000528537 144 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 AC084364.2-201ENST00000546924 395 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 MIR5002-201ENST00000584713 97 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 POLR3GP1-201ENST00000594073 261 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 MIR6079-201ENST00000635807 62 ntBASIC2.04□□□□□ -2.08
VPS4AQ9UN37 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
VPS4AQ9UN37 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
VPS4AQ9UN37 AC008555.8-201ENST00000623602 2168 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.08
VPS4AQ9UN37 MIR411-201ENST00000362239 96 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 RNU6-674P-201ENST00000363831 107 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.199-201ENST00000364014 102 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 RNA5SP160-201ENST00000364866 120 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 RNA5SP138-201ENST00000365098 114 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 RNU6-376P-201ENST00000384731 106 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 MIR526A2-201ENST00000390198 65 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 MTCO2P33-201ENST00000402100 465 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 RNU2-64P-201ENST00000411315 191 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 HSPE1P21-201ENST00000438283 308 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 AC091021.1-201ENST00000468051 388 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.03□□□□□ -2.08
VPS4AQ9UN37 RNU1-40P-201ENST00000516816 164 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 RNU1-97P-201ENST00000516872 164 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 CBX3P4-201ENST00000538909 354 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 AC022217.4-201ENST00000604389 163 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 AC069114.2-201ENST00000604699 304 ntBASIC2.03□□□□□ -2.08
VPS4AQ9UN37 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
VPS4AQ9UN37 Y_RNA.83-201ENST00000363005 113 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 SNORA67.3-201ENST00000384366 140 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 SNORA8-201ENST00000384574 139 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 MIR626-201ENST00000385032 94 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 AC019129.1-201ENST00000403786 261 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 SNORA36B-201ENST00000410438 131 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 RNA5SP338-201ENST00000410495 85 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 AL606517.2-201ENST00000442855 241 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 RNU7-94P-201ENST00000459576 63 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 AC025033.1-201ENST00000463883 194 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 SCARNA16.3-201ENST00000516595 184 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 MIR4498-201ENST00000577599 66 ntBASIC2.02□□□□□ -2.09
VPS4AQ9UN37 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.02□□□□□ -2.09
VPS4AQ9UN37 Y_RNA.262-201ENST00000364641 102 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 RNU6-296P-201ENST00000384608 107 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 RNU6-136P-201ENST00000384663 107 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 MIR562-201ENST00000384894 95 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 RNA5SP323-201ENST00000391094 133 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 AL512604.1-201ENST00000404812 257 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 MIR1278-201ENST00000408753 81 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS4AQ9UN37 RNU6-717P-201ENST00000459076 104 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 RNU6-1096P-201ENST00000517089 102 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VPS4AQ9UN37 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS4AQ9UN37 MIR5094-201ENST00000578766 85 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 MIR4781-201ENST00000585250 76 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 Z83818.1-201ENST00000603584 150 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 U1.36-201ENST00000620684 176 ntBASIC2.01□□□□□ -2.09
VPS4AQ9UN37 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VPS4AQ9UN37 MIR337-201ENST00000362281 93 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 RNU1-17P-201ENST00000363022 152 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 RNU6-112P-201ENST00000363599 104 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 RNU6-1205P-201ENST00000363625 106 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 MIR583-201ENST00000384846 75 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 RNA5SP100-201ENST00000410903 110 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 RNA5SP59-201ENST00000410922 110 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 AL021397.1-201ENST00000451806 248 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2□□□□□ -2.09
VPS4AQ9UN37 5S_rRNA.3-201ENST00000517021 110 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 AC011604.1-201ENST00000545978 196 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 MIR3668-201ENST00000582138 75 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 5S_rRNA.19-201ENST00000612131 110 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 5S_rRNA.18-201ENST00000621941 110 ntBASIC2□□□□□ -2.09
VPS4AQ9UN37 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
VPS4AQ9UN37 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
VPS4AQ9UN37 RNU4-13P-201ENST00000364019 141 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 271 ms