Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MCFD2P1-201ENST00000417812 300 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 MLLT10P1-201ENST00000418346 262 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 AF228730.4-201ENST00000421457 183 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 SNORD116-28-201ENST00000516123 91 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.702-201ENST00000516843 96 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 MIR3973-201ENST00000579824 107 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 MIR5188-201ENST00000583467 113 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 SNORA22-201ENST00000383907 134 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 SNORA22C-201ENST00000384614 134 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.570-201ENST00000384750 101 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 MIR532-201ENST00000385025 91 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 MTND1P14-201ENST00000427400 950 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 AC236972.2-201ENST00000434979 310 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 RPS20P10-201ENST00000451209 253 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 CYCTP-201ENST00000504253 315 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 MIR4698-201ENST00000577795 80 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 AC005972.2-201ENST00000604690 348 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 SNORD58B-201ENST00000607313 66 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 AL008636.1-201ENST00000625038 1018 ntBASIC1.03□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.39-201ENST00000362620 98 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 RNU1-124P-201ENST00000363861 145 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.363-201ENST00000365529 113 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.458-201ENST00000384240 102 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 RNU6-1105P-201ENST00000384774 107 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 AL160004.2-201ENST00000432935 350 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 AC245047.7-201ENST00000440265 293 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 SNORA31.4-201ENST00000516049 129 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 MIR4795-201ENST00000584182 89 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 AC010205.1-201ENST00000616668 449 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 AC027279.3-201ENST00000625055 122 ntBASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.02□□□□□ -2.25
VPS54Q9P1Q0 MIR373-201ENST00000362273 69 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 RNU4-79P-201ENST00000362764 141 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 SNORD81.1-201ENST00000363064 77 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.252-201ENST00000364556 101 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.253-201ENST00000364562 112 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.315-201ENST00000365117 102 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.579-201ENST00000390939 94 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 MIR1276-201ENST00000408707 83 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 MIR1298-201ENST00000408783 112 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 RNU6-855P-201ENST00000410395 104 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 LINC01399-202ENST00000458450 244 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.676-201ENST00000516393 96 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 RNU6-113P-201ENST00000516653 101 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 MIR4423-201ENST00000580922 80 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 RPS29P30-201ENST00000600975 111 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 AL357312.1-201ENST00000603879 298 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.772-201ENST00000606692 102 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 AC012676.2-201ENST00000619258 186 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 AL606534.2-204ENST00000635008 178 ntBASIC1.01□□□□□ -2.25
VPS54Q9P1Q0 RNU4-73P-201ENST00000363164 141 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 U8.5-201ENST00000364528 136 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 RNU1-93P-201ENST00000364704 169 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.331-201ENST00000365267 102 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 MIR522-201ENST00000385071 87 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 AC005042.3-201ENST00000453230 174 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 RPL39P39-201ENST00000455840 151 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1□□□□□ -2.25
VPS54Q9P1Q0 UBL5P1-201ENST00000507979 193 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 MTND3P22-201ENST00000510932 243 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1□□□□□ -2.25
VPS54Q9P1Q0 MIR4762-201ENST00000585261 75 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 DEFB117-201ENST00000602356 141 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 FAM71BP1-201ENST00000604431 523 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 AL096861.1-201ENST00000610899 123 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.804-201ENST00000615262 101 ntBASIC1□□□□□ -2.25
VPS54Q9P1Q0 SNORA25.9-201ENST00000365087 128 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 RNU1-115P-201ENST00000365329 160 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 RNU6-937P-201ENST00000384325 106 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 MIR516B2-201ENST00000385190 85 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 RNU6-976P-201ENST00000516086 111 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 RNU7-110P-201ENST00000516891 62 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 AC022616.4-201ENST00000522985 181 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 AC136932.1-201ENST00000574771 208 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 AC011373.1-201ENST00000607270 237 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 AC006157.1-201ENST00000611750 366 ntBASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
VPS54Q9P1Q0 RNU6-1084P-201ENST00000362498 107 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.143-201ENST00000363520 106 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.336-201ENST00000365307 109 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.341-201ENST00000365341 102 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 SNORA72-201ENST00000384339 132 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 RNY1P14-201ENST00000384426 108 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 AL590004.1-201ENST00000405321 300 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 RNU4-30P-201ENST00000410245 143 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 AL390729.2-201ENST00000416137 156 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 AC002429.1-201ENST00000437672 148 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 snoU13.25-201ENST00000458945 104 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 SNORD79.1-201ENST00000516069 84 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 SNORA40.14-201ENST00000516543 86 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 SNORD45.4-201ENST00000516629 73 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 MIR3192-201ENST00000584920 77 ntBASIC0.98□□□□□ -2.25
VPS54Q9P1Q0 AL121655.1-201ENST00000605811 308 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms