Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU6-1116P-201ENST00000517269 99 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 RPS29P30-201ENST00000600975 111 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 AC120024.3-201ENST00000603167 156 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 AL022345.2-201ENST00000606307 135 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.772-201ENST00000606692 102 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 BX284668.6-201ENST00000606899 438 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.172-201ENST00000363765 102 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 RNU6-53P-201ENST00000365367 106 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 RNY3P14-201ENST00000384309 102 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
DDX28Q9NUL7 AC104332.1-201ENST00000440471 797 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 U8.19-201ENST00000459095 133 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 SNORA31.2-201ENST00000516019 134 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 SNORD116-28-201ENST00000516123 91 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 RNU6-947P-201ENST00000516264 106 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 RNU7-40P-201ENST00000516397 64 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 RNU4-77P-201ENST00000516692 156 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 AC093027.1-201ENST00000546698 429 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 MIR4423-201ENST00000580922 80 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 MIR5188-201ENST00000583467 113 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 MIR4762-201ENST00000585261 75 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 AC004832.4-201ENST00000608952 331 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 AL591926.4-201ENST00000616895 298 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 AC104985.2-201ENST00000620598 500 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 AC027335.2-201ENST00000624030 375 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 AL606534.2-204ENST00000635008 178 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 AC112487.2-201ENST00000637950 304 ntBASIC1.06□□□□□ -2.24
DDX28Q9NUL7 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
DDX28Q9NUL7 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.5-201ENST00000362334 102 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 U8.5-201ENST00000364528 136 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.329-201ENST00000365209 107 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 SNORD114-22-201ENST00000365423 72 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.458-201ENST00000384240 102 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 AL160004.2-201ENST00000432935 350 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 RPS20P10-201ENST00000451209 253 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 RPL39P39-201ENST00000455840 151 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 AC048334.1-201ENST00000477975 159 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 MTND3P22-201ENST00000510932 243 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 AL121655.1-201ENST00000605811 308 ntBASIC1.05□□□□□ -2.24
DDX28Q9NUL7 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.58-201ENST00000362807 102 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.154-201ENST00000363624 102 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 RNY3P1-201ENST00000365085 102 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 RNY3-201ENST00000365484 102 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 PIGPP3-201ENST00000425307 415 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.04□□□□□ -2.24
DDX28Q9NUL7 AC245047.7-201ENST00000440265 293 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.04□□□□□ -2.24
DDX28Q9NUL7 LINC01399-202ENST00000458450 244 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 AC114811.1-201ENST00000507207 168 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 SNORA25.10-201ENST00000515926 124 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 FAM106DP-201ENST00000586416 501 ntBASIC1.04□□□□□ -2.24
DDX28Q9NUL7 RNU4-79P-201ENST00000362764 141 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 RNU1-124P-201ENST00000363861 145 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 SNORA72-201ENST00000384339 132 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.526-201ENST00000384572 110 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 MIR526A1-201ENST00000384897 85 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 MIR222-201ENST00000384992 110 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 MT-TD-201ENST00000387419 68 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 RNU6-910P-201ENST00000390844 107 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 AL591704.2-201ENST00000421658 181 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 RPS29P28-201ENST00000446439 141 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 COX6CP14-201ENST00000469580 174 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 RPS23P4-201ENST00000487908 423 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.713-201ENST00000517013 96 ntBASIC1.03□□□□□ -2.24
DDX28Q9NUL7 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.03□□□□□ -2.24
DDX28Q9NUL7 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.03□□□□□ -2.24
DDX28Q9NUL7 RNU4-73P-201ENST00000363164 141 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.197-201ENST00000364004 102 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.331-201ENST00000365267 102 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 MIR452-201ENST00000385020 85 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 MIR522-201ENST00000385071 87 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 MIR613-201ENST00000385248 95 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 RNU6-855P-201ENST00000410395 104 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 AC024067.1-201ENST00000426199 223 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 AC093852.1-201ENST00000503587 266 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
DDX28Q9NUL7 AC011373.1-201ENST00000607270 237 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 SNORD58B-201ENST00000607313 66 ntBASIC1.02□□□□□ -2.25
DDX28Q9NUL7 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.253-201ENST00000364562 112 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.315-201ENST00000365117 102 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.336-201ENST00000365307 109 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.341-201ENST00000365341 102 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 RNU6-1323P-201ENST00000384025 107 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 SNORD63-201ENST00000384262 68 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.579-201ENST00000390939 94 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 SNORD12-201ENST00000391002 90 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 U8.20-201ENST00000459445 131 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.01□□□□□ -2.25
DDX28Q9NUL7 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.01□□□□□ -2.25
DDX28Q9NUL7 RNU7-116P-201ENST00000516940 62 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 MIR4795-201ENST00000584182 89 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
DDX28Q9NUL7 RMST_2.1-201ENST00000617263 136 ntBASIC1.01□□□□□ -2.25
DDX28Q9NUL7 RNU6-1084P-201ENST00000362498 107 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 195.5 ms