Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.14-201ENST00000362415 103 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 RNU6-1266P-201ENST00000362794 105 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.191-201ENST00000363972 113 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 RNU6-801P-201ENST00000364087 105 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 RNU6-702P-201ENST00000364982 107 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.310-201ENST00000365063 113 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 RNU6-326P-201ENST00000365480 107 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 SNORA48.1-201ENST00000390879 135 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 RNU6-651P-201ENST00000411040 105 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 RNU2-14P-201ENST00000411053 191 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 EBAG9P1-201ENST00000418955 543 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 AL606517.2-201ENST00000442855 241 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 RNU6-1132P-201ENST00000459214 107 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 RPS27P22-201ENST00000478056 241 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 AC091959.1-201ENST00000495857 238 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 AC097462.1-201ENST00000514125 324 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 AC062037.2-201ENST00000610137 73 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
UPF3AQ9H1J1 MIR126-201ENST00000362291 85 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.288-201ENST00000364854 92 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.307-201ENST00000365022 117 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.556-201ENST00000384677 113 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 RNU6-997P-201ENST00000384725 107 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 MIR1302-3-201ENST00000408128 138 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 MIR1253-201ENST00000408273 105 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 CST2P1-201ENST00000425770 87 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 SUMO1P2-201ENST00000452524 304 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 RNU1-98P-201ENST00000458992 160 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 RPS26P45-201ENST00000471748 340 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 SUB1P4-201ENST00000566062 339 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 MIR5094-201ENST00000578766 85 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 MIR4452-201ENST00000583004 71 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 AC004832.4-201ENST00000608952 331 ntBASIC1.56□□□□□ -2.16
UPF3AQ9H1J1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 RNU6-1048P-201ENST00000364054 107 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.217-201ENST00000364214 105 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.368-201ENST00000365547 113 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 RNU6-662P-201ENST00000384253 104 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 SNORA26.5-201ENST00000391215 123 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 RNA5SP212-201ENST00000391223 107 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 RNU6-1186P-201ENST00000410429 97 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 RNA5SP511-201ENST00000410487 115 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 MTND2P29-201ENST00000438595 412 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 RPS27P1-201ENST00000450552 247 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 HSPE1P13-201ENST00000451143 297 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.641-201ENST00000459414 105 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.637-201ENST00000459424 114 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 AC010409.1-201ENST00000487382 476 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 AL163195.1-201ENST00000496941 348 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 AC084364.2-201ENST00000546924 395 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 AL137100.2-201ENST00000555786 315 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 AC004817.2-201ENST00000561794 651 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 MIR3660-201ENST00000584845 100 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 U2.14-201ENST00000615943 113 ntBASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.55□□□□□ -2.16
UPF3AQ9H1J1 UBE2WP1-201ENST00000362030 340 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RNU6-271P-201ENST00000363858 105 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.447-201ENST00000384184 113 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 SNORA8-201ENST00000384574 139 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RNU6-296P-201ENST00000384608 107 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.539-201ENST00000384635 107 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 AL603910.2-201ENST00000407268 136 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RNA5SP100-201ENST00000410903 110 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RNA5SP59-201ENST00000410922 110 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RPS20P10-201ENST00000451209 253 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RNA5SP57-201ENST00000459463 123 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 AC008834.1-201ENST00000511612 175 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RNU7-99P-201ENST00000516271 62 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RNU6-1146P-201ENST00000516282 102 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 RNU7-172P-201ENST00000517125 64 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 MIR3128-201ENST00000581957 66 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 MIR4713-201ENST00000582691 75 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 AC073413.2-201ENST00000604332 360 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 AC022217.4-201ENST00000604389 163 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 MIR6078-201ENST00000611069 100 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.54□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.117-201ENST00000363294 101 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.275-201ENST00000364726 110 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 RNU6-740P-201ENST00000364734 105 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 Y_RNA.477-201ENST00000384352 108 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 RNU6-136P-201ENST00000384663 107 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 MIR320A-201ENST00000385302 82 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 RNU6-763P-201ENST00000390865 106 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 RNU6-855P-201ENST00000410395 104 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 SNRPGP13-201ENST00000442212 177 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 U8.19-201ENST00000459095 133 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 AC023790.1-201ENST00000482174 347 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 144.7 ms