Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 SNORA20.3-201ENST00000516880 132 ntBASIC0.91□□□□□ -2.26
ZNF560Q96MR9 MIR4698-201ENST00000577795 80 ntBASIC0.91□□□□□ -2.26
ZNF560Q96MR9 MIR3192-201ENST00000584920 77 ntBASIC0.91□□□□□ -2.26
ZNF560Q96MR9 AC022441.3-201ENST00000605737 136 ntBASIC0.91□□□□□ -2.26
ZNF560Q96MR9 AC108706.1-201ENST00000611053 297 ntBASIC0.91□□□□□ -2.26
ZNF560Q96MR9 AL355073.2-201ENST00000612106 557 ntBASIC0.91□□□□□ -2.26
ZNF560Q96MR9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
ZNF560Q96MR9 Y_RNA.172-201ENST00000363765 102 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 SNORD114-2-201ENST00000363953 78 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 RNY3P11-201ENST00000364153 102 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.253-201ENST00000364562 112 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 SNORA72-201ENST00000384339 132 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 RNU6-1297P-201ENST00000384415 104 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 MIR522-201ENST00000385071 87 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 MIR628-201ENST00000385229 95 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 SNORA75.2-201ENST00000391138 150 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 SNORA75.3-201ENST00000391231 150 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 RBM11P1-201ENST00000604951 799 ntBASIC0.9□□□□□ -2.27
ZNF560Q96MR9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.387-201ENST00000383918 102 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 MIR559-201ENST00000385188 96 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 MIR136-201ENST00000385207 82 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 RPS20P10-201ENST00000451209 253 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 RPS29P1-201ENST00000465274 159 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 PDCD5P2-201ENST00000507570 312 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 SNORA74.3-201ENST00000517108 154 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 AC011476.5-201ENST00000615594 130 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 AC099654.14-201ENST00000638599 341 ntBASIC0.89□□□□□ -2.27
ZNF560Q96MR9 RNA5SP264-201ENST00000363115 107 ntBASIC0.88□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.146-201ENST00000363549 102 ntBASIC0.88□□□□□ -2.27
ZNF560Q96MR9 MIR15B-201ENST00000385045 98 ntBASIC0.88□□□□□ -2.27
ZNF560Q96MR9 RNU6-710P-201ENST00000410424 105 ntBASIC0.88□□□□□ -2.27
ZNF560Q96MR9 RN7SKP295-201ENST00000517264 153 ntBASIC0.88□□□□□ -2.27
ZNF560Q96MR9 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.88□□□□□ -2.27
ZNF560Q96MR9 VN1R91P-201ENST00000594377 169 ntBASIC0.88□□□□□ -2.27
ZNF560Q96MR9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
ZNF560Q96MR9 RNU6-1084P-201ENST00000362498 107 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 MCFD2P1-201ENST00000417812 300 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 AC004941.2-201ENST00000427009 228 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 RNU6-966P-201ENST00000516479 104 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 SNORD45.4-201ENST00000516629 73 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.714-201ENST00000517065 90 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 AP003716.2-201ENST00000528260 108 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 MIR6788-201ENST00000618842 66 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.87□□□□□ -2.27
ZNF560Q96MR9 U6.92-201ENST00000636464 89 ntBASIC0.87□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.116-201ENST00000363292 103 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.142-201ENST00000363491 102 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.259-201ENST00000364619 101 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 snoU2-30.1-201ENST00000365012 70 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 MIR520C-201ENST00000385005 87 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 MIR942-201ENST00000401111 86 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.86□□□□□ -2.27
ZNF560Q96MR9 HMGN2P32-201ENST00000444648 269 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 ACA64.5-201ENST00000516207 127 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 RNU6-699P-201ENST00000517081 110 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 AC090142.3-201ENST00000519012 385 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 MIR151B-201ENST00000584249 96 ntBASIC0.86□□□□□ -2.27
ZNF560Q96MR9 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.86□□□□□ -2.27
ZNF560Q96MR9 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.86□□□□□ -2.27
ZNF560Q96MR9 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.86□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.329-201ENST00000365209 107 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 RNU6-1040P-201ENST00000383974 107 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 RNU6-1323P-201ENST00000384025 107 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 RNU6-708P-201ENST00000384217 107 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.570-201ENST00000384750 101 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 MIR516B2-201ENST00000385190 85 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 RNY4P36-201ENST00000391116 96 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 AL390729.2-201ENST00000416137 156 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 MLLT10P1-201ENST00000418346 262 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 RBMX2P4-201ENST00000441256 376 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 RNU6-351P-201ENST00000516097 100 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 RNU6-277P-201ENST00000516272 106 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 AC010205.1-201ENST00000616668 449 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 MTND4LP32-201ENST00000636111 270 ntBASIC0.85□□□□□ -2.27
ZNF560Q96MR9 RNU6-1175P-201ENST00000365200 107 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 SNORD14.1-201ENST00000365609 90 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.384-201ENST00000383909 102 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 SNORD116-29-201ENST00000384516 83 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 MIR608-201ENST00000384820 100 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 MIR518E-201ENST00000385252 88 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 RNU6-131P-201ENST00000391144 107 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 RNU2-64P-201ENST00000411315 191 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.84□□□□□ -2.27
ZNF560Q96MR9 FABP5P4-201ENST00000437203 171 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.84□□□□□ -2.27
ZNF560Q96MR9 AC005042.3-201ENST00000453230 174 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 RNA5SP255-201ENST00000516370 107 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 RNU7-43P-201ENST00000516554 64 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 RNU6-197P-201ENST00000516680 100 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 RNU7-116P-201ENST00000516940 62 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 Y_RNA.718-201ENST00000517110 102 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.84□□□□□ -2.27
ZNF560Q96MR9 MIR4423-201ENST00000580922 80 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 AC013244.2-201ENST00000603396 103 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 AL078603.1-201ENST00000603824 313 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 AC122108.2-201ENST00000611946 526 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 MIR6866-201ENST00000638146 69 ntBASIC0.84□□□□□ -2.27
ZNF560Q96MR9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.84□□□□□ -2.28
ZNF560Q96MR9 AL442644.1-201ENST00000454390 3105 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms