Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 Y_RNA.813-201ENST00000364639 102 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 SNORD50B-201ENST00000364995 70 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 RNU6-163P-201ENST00000384396 106 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 MIR516B2-201ENST00000385190 85 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 MTND1P14-201ENST00000427400 950 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 AC099799.1-201ENST00000439809 192 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 RNU7-21P-201ENST00000459430 62 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 RNU7-41P-201ENST00000515917 61 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 VN1R91P-201ENST00000594377 169 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 PART1_1.1-201ENST00000611761 217 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 AC010205.1-201ENST00000616668 449 ntBASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
CCDC54Q8NEL0 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 SNORD114-2-201ENST00000363953 78 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 RNU6-324P-201ENST00000363957 106 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 RNU1-36P-201ENST00000365130 165 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 AC117470.1-201ENST00000381974 330 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 MIR1185-1-201ENST00000408598 86 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 MCFD2P1-201ENST00000417812 300 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 AC063976.4-201ENST00000421971 163 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 SNORA31.4-201ENST00000516049 129 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 ACA64.5-201ENST00000516207 127 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 SNORD111.1-201ENST00000516421 86 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 MIR3145-201ENST00000580727 82 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 DEFB117-201ENST00000602356 141 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 AC092447.9-201ENST00000603395 144 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 AC006380.1-201ENST00000603598 186 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 AC091895.1-201ENST00000624494 256 ntBASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC54Q8NEL0 AC008163.1-202ENST00000636004 2889 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 AC068700.1-201ENST00000565862 3754 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.140-201ENST00000363474 103 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.230-201ENST00000364348 109 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.252-201ENST00000364556 101 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.327-201ENST00000365201 102 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 MIR222-201ENST00000384992 110 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 MIR1302-7-201ENST00000408841 72 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.621-201ENST00000411065 96 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 AL390729.2-201ENST00000416137 156 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 AC245047.8-201ENST00000456455 284 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 SNORA70.12-201ENST00000516084 153 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 RNU6-351P-201ENST00000516097 100 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 RNA5SP458-201ENST00000516188 119 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 RN7SKP295-201ENST00000517264 153 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 MIR4653-201ENST00000585107 83 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 AC013244.2-201ENST00000603396 103 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 AC005972.2-201ENST00000604690 348 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 AC211469.2-201ENST00000605461 205 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.75□□□□□ -2.29
CCDC54Q8NEL0 HSBP1P2-201ENST00000299671 229 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 SNORA25.3-201ENST00000363205 127 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.263-201ENST00000364659 114 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.286-201ENST00000364813 102 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 RNU6-392P-201ENST00000364926 101 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 RNY1P14-201ENST00000384426 108 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 SNORD12-201ENST00000391002 90 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 RNU2-14P-201ENST00000411053 191 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 NDUFA4P2-201ENST00000489989 244 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 RNU6-322P-201ENST00000516010 103 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 SNORD45.4-201ENST00000516629 73 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 snoU13.31-201ENST00000607291 104 ntBASIC0.74□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.368-201ENST00000365547 113 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 RNU6-937P-201ENST00000384325 106 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 SNORA72-201ENST00000384339 132 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 SNORA80D-201ENST00000384488 135 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 MIR628-201ENST00000385229 95 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 RNU4-30P-201ENST00000410245 143 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 SNRPGP14-201ENST00000435400 219 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 LINC01399-202ENST00000458450 244 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 RN7SKP164-201ENST00000516138 266 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 SNORA74.3-201ENST00000517108 154 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 SNORD116.3-201ENST00000517176 78 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 AL357312.1-201ENST00000603879 298 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 FAM71BP1-201ENST00000604431 523 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 AC007485.1-201ENST00000616755 206 ntBASIC0.73□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.70-201ENST00000362886 110 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 RNA5SP99-201ENST00000364020 114 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 RNU6-1048P-201ENST00000364054 107 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 U8.7-201ENST00000364940 136 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 RNU6-1335P-201ENST00000365426 107 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.384-201ENST00000383909 102 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.428-201ENST00000384078 102 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 MIR605-201ENST00000385078 83 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 Y_RNA.579-201ENST00000390939 94 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 SNORD28B-201ENST00000390993 75 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 RNU6-855P-201ENST00000410395 104 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 RNU2-64P-201ENST00000411315 191 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 MLLT10P1-201ENST00000418346 262 ntBASIC0.72□□□□□ -2.29
CCDC54Q8NEL0 AL606490.4-201ENST00000423117 127 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms