Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC019288.1-201ENST00000557918 224 ntBASIC3.71□□□□□ -1.82
SH3RF1Q7Z6J0 AC022254.1-201ENST00000567857 235 ntBASIC3.71□□□□□ -1.82
SH3RF1Q7Z6J0 MIR3199-1-201ENST00000582434 88 ntBASIC3.71□□□□□ -1.82
SH3RF1Q7Z6J0 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.71□□□□□ -1.82
SH3RF1Q7Z6J0 AC110079.1-202ENST00000635213 138 ntBASIC3.71□□□□□ -1.82
SH3RF1Q7Z6J0 RNU1-101P-201ENST00000391171 127 ntBASIC3.7□□□□□ -1.82
SH3RF1Q7Z6J0 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.7□□□□□ -1.82
SH3RF1Q7Z6J0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC3.7□□□□□ -1.82
SH3RF1Q7Z6J0 RNU1-142P-201ENST00000516682 145 ntBASIC3.7□□□□□ -1.82
SH3RF1Q7Z6J0 SUMO2P16-201ENST00000519475 264 ntBASIC3.7□□□□□ -1.82
SH3RF1Q7Z6J0 uc_338.1-201ENST00000612113 180 ntBASIC3.7□□□□□ -1.82
SH3RF1Q7Z6J0 MIR376A2-201ENST00000636782 80 ntBASIC3.7□□□□□ -1.82
SH3RF1Q7Z6J0 AL035425.3-201ENST00000564206 4996 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 RNA5SP432-201ENST00000362480 116 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 SNORD56.3-201ENST00000363507 71 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 RNA5SP139-201ENST00000364340 117 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 RNU1-133P-201ENST00000364867 167 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 Y_RNA.298-201ENST00000364960 107 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 RNU6-442P-201ENST00000383968 104 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 FTH1P12-201ENST00000432137 551 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 MICF-203ENST00000432679 129 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 RNU7-164P-201ENST00000459221 62 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 SNORA64.4-201ENST00000516632 81 ntBASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.69□□□□□ -1.82
SH3RF1Q7Z6J0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 RNU6-805P-201ENST00000365643 106 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 RNY1P6-201ENST00000384193 109 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 RNU6-24P-201ENST00000384440 107 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 RNA5SP323-201ENST00000391094 133 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 AL451046.2-201ENST00000403074 277 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 Y_RNA.601-201ENST00000410500 113 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 RPL39P25-201ENST00000449384 154 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 AL049830.1-201ENST00000468034 425 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 AC091544.4-201ENST00000555268 342 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 MIR4778-201ENST00000577635 80 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 MIR3163-201ENST00000581592 73 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 MIR5588-201ENST00000581890 63 ntBASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SH3RF1Q7Z6J0 RNU6-349P-201ENST00000362402 107 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 RNU6-1099P-201ENST00000363533 107 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 SNORD115-28-201ENST00000363931 81 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 SNORD14E-201ENST00000364009 85 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 Y_RNA.313-201ENST00000365095 103 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 MIR522-201ENST00000385071 87 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 RNA5SP467-201ENST00000391274 118 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 RPL21P3-201ENST00000395517 478 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 MIR1912-201ENST00000410389 80 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 AC096949.1-201ENST00000412047 152 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 AL353689.1-201ENST00000438895 199 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 RNU7-171P-201ENST00000459581 62 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 RNU7-61P-201ENST00000515897 61 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 RNU7-128P-201ENST00000517247 62 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 AP002004.2-201ENST00000531656 154 ntBASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.67□□□□□ -1.82
SH3RF1Q7Z6J0 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 RNU6-1084P-201ENST00000362498 107 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 RNA5SP383-201ENST00000362934 120 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 RNU6-1104P-201ENST00000384723 104 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 CST9LP2-201ENST00000437612 320 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 RNU7-94P-201ENST00000459576 63 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 RN7SL863P-201ENST00000462370 296 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 MIR3945-201ENST00000581853 98 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.66□□□□□ -1.82
SH3RF1Q7Z6J0 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
SH3RF1Q7Z6J0 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
SH3RF1Q7Z6J0 SNORD68-201ENST00000363214 84 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-816P-201ENST00000390914 107 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-1268P-201ENST00000391214 107 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-1239P-201ENST00000391310 107 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 AC099677.2-201ENST00000436385 175 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-1041P-201ENST00000516254 102 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 AC006441.5-201ENST00000612680 209 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 MIR6715A-201ENST00000615929 79 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 U7.3-201ENST00000616123 62 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 MIR4662A-201ENST00000637499 67 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 MIR7153-201ENST00000637758 57 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 MIR7515-201ENST00000637837 67 ntBASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.65□□□□□ -1.83
SH3RF1Q7Z6J0 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms