Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RPL23AP94-201ENST00000512518 302 ntBASIC2.05□□□□□ -2.08
HOXA4Q00056 AC024995.1-201ENST00000523014 93 ntBASIC2.05□□□□□ -2.08
HOXA4Q00056 DNAJC19P2-201ENST00000593340 302 ntBASIC2.05□□□□□ -2.08
HOXA4Q00056 AL365222.1-201ENST00000614661 98 ntBASIC2.05□□□□□ -2.08
HOXA4Q00056 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
HOXA4Q00056 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
HOXA4Q00056 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
HOXA4Q00056 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
HOXA4Q00056 MIR21-201ENST00000362134 72 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 RNU4-82P-201ENST00000362443 140 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 SNORA1B-201ENST00000362535 133 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 Y_RNA.253-201ENST00000364562 112 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 RNU4-11P-201ENST00000365287 132 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 RNU6-484P-201ENST00000384016 107 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 Y_RNA.488-201ENST00000384403 102 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 Y_RNA.497-201ENST00000384447 98 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 RNU6-768P-201ENST00000384683 107 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 Y_RNA.586-201ENST00000391146 98 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 RNA5SP137-201ENST00000516833 135 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 AC022217.4-201ENST00000604389 163 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 JPX_2.1-201ENST00000614161 69 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 AC007336.1-201ENST00000576365 3828 ntBASIC2.04□□□□□ -2.08
HOXA4Q00056 RNA5SP456-201ENST00000364002 114 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 Y_RNA.218-201ENST00000364218 104 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 DEFA7P-201ENST00000382676 285 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 Y_RNA.521-201ENST00000384560 114 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 SNORA22C-201ENST00000384614 134 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 MIR515-2-201ENST00000384883 83 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 MIR515-1-201ENST00000384884 83 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 MIR562-201ENST00000384894 95 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 SNORA12.1-201ENST00000390873 148 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 RNA5SP109-201ENST00000391010 116 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 RNU11-5P-201ENST00000391216 129 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 MIR1283-2-201ENST00000408621 87 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 RNU2-55P-201ENST00000411146 174 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 MLLT10P1-201ENST00000418346 262 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 SNRPGP10-201ENST00000432323 225 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 AL049830.1-201ENST00000468034 425 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 HMGN1P7-201ENST00000491722 313 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 AC026436.1-201ENST00000510537 270 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 SNORD77.4-201ENST00000516158 81 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 RNU6-1299P-201ENST00000516316 100 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 RNU7-149P-201ENST00000516739 59 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXA4Q00056 AC084364.2-201ENST00000546924 395 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXA4Q00056 AC005786.1-201ENST00000588553 154 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 Pinc.1-201ENST00000616452 154 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 U4.3-201ENST00000621047 82 ntBASIC2.03□□□□□ -2.08
HOXA4Q00056 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.03□□□□□ -2.08
HOXA4Q00056 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.09
HOXA4Q00056 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HOXA4Q00056 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HOXA4Q00056 RNU6-1290P-201ENST00000362957 109 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 Y_RNA.261-201ENST00000364631 102 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 RNU1-109P-201ENST00000383960 147 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 Y_RNA.432-201ENST00000384087 111 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 RNU6-959P-201ENST00000384671 107 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 SNORA67.4-201ENST00000384688 142 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 MIR518A2-201ENST00000384966 87 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 AL359511.1-201ENST00000402970 211 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 RNU6-735P-201ENST00000410612 107 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 HMGN2P3-201ENST00000433603 273 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 HMGN2P5-201ENST00000436882 273 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.02□□□□□ -2.09
HOXA4Q00056 RPS27P1-201ENST00000450552 247 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 AC023449.1-201ENST00000454464 154 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 AC234781.5-201ENST00000508429 271 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 SNORA25.12-201ENST00000516202 82 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 MIR5094-201ENST00000578766 85 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 MIR548X2-201ENST00000579776 100 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 MIR378D2-201ENST00000580636 98 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 AP001485.1-201ENST00000604799 199 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 AL591926.4-201ENST00000616895 298 ntBASIC2.02□□□□□ -2.09
HOXA4Q00056 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.01□□□□□ -2.09
HOXA4Q00056 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
HOXA4Q00056 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
HOXA4Q00056 MIR126-201ENST00000362291 85 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 Y_RNA.91-201ENST00000363042 107 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 SNORA25.6-201ENST00000364121 118 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 Y_RNA.343-201ENST00000365354 112 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 RNU6-1336P-201ENST00000383886 109 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 RNU6-22P-201ENST00000384355 107 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 Y_RNA.486-201ENST00000384398 107 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
HOXA4Q00056 HMGN2P39-201ENST00000398005 273 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 AL513328.1-201ENST00000446460 224 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 RNU7-94P-201ENST00000459576 63 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 OR9P1P-201ENST00000496431 281 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 RNVU1-2-201ENST00000516326 135 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 RNU6-197P-201ENST00000516680 100 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 AL358944.1-201ENST00000528537 144 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 MIR5092-201ENST00000583139 88 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 SNORD14A-201ENST00000606526 91 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 MIR6844-201ENST00000637122 62 ntBASIC2.01□□□□□ -2.09
HOXA4Q00056 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.01□□□□□ -2.09
HOXA4Q00056 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2□□□□□ -2.09
HOXA4Q00056 Y_RNA.500-201ENST00000384466 111 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms