Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU6-136P-201ENST00000384663 107 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 Y_RNA.556-201ENST00000384677 113 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 RNA5SP109-201ENST00000391010 116 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 SNORA26.5-201ENST00000391215 123 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 MIR1302-3-201ENST00000408128 138 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 RNU2-7P-201ENST00000410794 178 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 RNU6-651P-201ENST00000411040 105 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 AL162725.1-201ENST00000435405 301 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.84□□□□□ -2.11
HDAC4P56524 Y_RNA.641-201ENST00000459414 105 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 SNORA31.17-201ENST00000516953 127 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.84□□□□□ -2.11
HDAC4P56524 MIR4643-201ENST00000577473 78 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.84□□□□□ -2.11
HDAC4P56524 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.84□□□□□ -2.11
HDAC4P56524 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
HDAC4P56524 UBE2WP1-201ENST00000362030 340 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 Y_RNA.288-201ENST00000364854 92 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 SNORD48-201ENST00000364953 64 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 RNU6-702P-201ENST00000364982 107 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 Y_RNA.341-201ENST00000365341 102 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 RNU6-662P-201ENST00000384253 104 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
HDAC4P56524 SNORA12.1-201ENST00000390873 148 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 SNORA53-201ENST00000391141 249 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 RNU6-710P-201ENST00000410424 105 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 RNU6-1132P-201ENST00000459214 107 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 Y_RNA.637-201ENST00000459424 114 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 RNU7-94P-201ENST00000459576 63 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 AC091021.1-201ENST00000468051 388 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 TRMT112P2-201ENST00000512910 132 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 SNORA27.4-201ENST00000516650 95 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 AC136628.3-201ENST00000521868 290 ntBASIC1.83□□□□□ -2.12
HDAC4P56524 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.83□□□□□ -2.12
HDAC4P56524 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.83□□□□□ -2.12
HDAC4P56524 AC018630.2-201ENST00000534866 2403 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HDAC4P56524 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.82□□□□□ -2.12
HDAC4P56524 SNORA25.1-201ENST00000362326 128 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 SNORA4.2-201ENST00000365313 147 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 Y_RNA.456-201ENST00000384232 111 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 RNU6-376P-201ENST00000384731 106 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 MIR489-201ENST00000384923 84 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 RNU6-763P-201ENST00000390865 106 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 HSPE1P21-201ENST00000438283 308 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 RPS4XP11-201ENST00000446897 772 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 SNORA31.10-201ENST00000516482 106 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 RNA5SP481-201ENST00000516814 122 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 CBX3P4-201ENST00000538909 354 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 AC024614.2-201ENST00000577584 372 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 MIR3198-2-201ENST00000577868 80 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 MIR3618-201ENST00000580330 88 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 AL359821.1-201ENST00000605519 182 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 AC062037.2-201ENST00000610137 73 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 U2.14-201ENST00000615943 113 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 AC084768.2-201ENST00000622736 221 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 MIR6079-201ENST00000635807 62 ntBASIC1.82□□□□□ -2.12
HDAC4P56524 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.81□□□□□ -2.12
HDAC4P56524 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.81□□□□□ -2.12
HDAC4P56524 RNU6-661P-201ENST00000362409 107 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 Y_RNA.117-201ENST00000363294 101 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 Y_RNA.275-201ENST00000364726 110 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 RNU6-740P-201ENST00000364734 105 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 SNORA72.4-201ENST00000384174 132 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 AL603910.2-201ENST00000407268 136 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.81□□□□□ -2.12
HDAC4P56524 AC024067.1-201ENST00000426199 223 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 AC104332.1-201ENST00000440471 797 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 U8.19-201ENST00000459095 133 ntBASIC1.81□□□□□ -2.12
HDAC4P56524 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
HDAC4P56524 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.8□□□□□ -2.12
HDAC4P56524 U8.7-201ENST00000364940 136 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 Y_RNA.307-201ENST00000365022 117 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 MIR30A-201ENST00000385092 71 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 HSPE1P9-201ENST00000440046 311 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.8□□□□□ -2.12
HDAC4P56524 AC008834.1-201ENST00000511612 175 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.8□□□□□ -2.12
HDAC4P56524 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.8□□□□□ -2.12
HDAC4P56524 AC004817.2-201ENST00000561794 651 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.8□□□□□ -2.12
HDAC4P56524 AC005972.2-201ENST00000604690 348 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 AL008718.3-201ENST00000610217 321 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 AC134026.1-201ENST00000623249 2239 ntBASIC1.8□□□□□ -2.12
HDAC4P56524 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
HDAC4P56524 Y_RNA.44-201ENST00000362676 108 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 RNU6-1272P-201ENST00000362776 107 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 RNU6-1323P-201ENST00000384025 107 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 RNU6-439P-201ENST00000384188 106 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 Y_RNA.539-201ENST00000384635 107 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 AC245047.3-201ENST00000429428 127 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 RNU7-141P-201ENST00000459304 62 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 AC005840.1-201ENST00000498412 377 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 RNU6-250P-201ENST00000516958 103 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 RNU6-1096P-201ENST00000517089 102 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.79□□□□□ -2.12
HDAC4P56524 MIR3128-201ENST00000581957 66 ntBASIC1.79□□□□□ -2.12
HDAC4P56524 AL078604.3-201ENST00000615580 211 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 205.7 ms