Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 RNU6-417P-201ENST00000384712 107 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 RNU6-1248P-201ENST00000391096 64 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 SNORA26.5-201ENST00000391215 123 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 RNU6-710P-201ENST00000410424 105 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 RN7SL274P-201ENST00000492268 272 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 SNORD116-28-201ENST00000516123 91 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.86□□□□□ -2.11
CLCN3P51790 MIR4255-201ENST00000579351 72 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 MIR4303-201ENST00000581299 66 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 MIR3668-201ENST00000582138 75 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 AL359075.3-201ENST00000613288 217 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 U6.73-201ENST00000619194 103 ntBASIC1.86□□□□□ -2.11
CLCN3P51790 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.85□□□□□ -2.11
CLCN3P51790 AC245060.5-201ENST00000610778 3293 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 Y_RNA.54-201ENST00000362766 105 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 RNU6-514P-201ENST00000384208 107 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 Y_RNA.456-201ENST00000384232 111 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 Y_RNA.785-201ENST00000384290 109 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 MIR520A-201ENST00000384862 85 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 AC245047.4-201ENST00000433189 144 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 RPL36AP21-201ENST00000490372 323 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 MRPS17P9-201ENST00000511924 393 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 RNU6-138P-201ENST00000515952 107 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 Y_RNA.700-201ENST00000516806 100 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 RNU7-128P-201ENST00000517247 62 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.85□□□□□ -2.11
CLCN3P51790 MIR4713-201ENST00000582691 75 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 AL096840.1-201ENST00000603287 93 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.85□□□□□ -2.11
CLCN3P51790 AL442067.1-201ENST00000613261 223 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 snoU18.1-201ENST00000629629 71 ntBASIC1.85□□□□□ -2.11
CLCN3P51790 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
CLCN3P51790 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.84□□□□□ -2.11
CLCN3P51790 RNU6-661P-201ENST00000362409 107 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 Y_RNA.65-201ENST00000362846 100 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 RNU6-324P-201ENST00000363957 106 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 SNORA63D-201ENST00000364359 132 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 Y_RNA.274-201ENST00000364714 101 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 RNU6-211P-201ENST00000384047 107 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 SNORA72.4-201ENST00000384174 132 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 RNU6-296P-201ENST00000384608 107 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 RNU11-5P-201ENST00000391216 129 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 EBAG9P1-201ENST00000418955 543 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 AC010154.1-201ENST00000425857 269 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 RPS26P45-201ENST00000471748 340 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.84□□□□□ -2.11
CLCN3P51790 SNORA70.12-201ENST00000516084 153 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 RNU6-1337P-201ENST00000516525 95 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 RNU1-142P-201ENST00000516682 145 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.84□□□□□ -2.11
CLCN3P51790 CBX3P4-201ENST00000538909 354 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 AC084364.2-201ENST00000546924 395 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.84□□□□□ -2.11
CLCN3P51790 MIR3618-201ENST00000580330 88 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 AL512605.2-201ENST00000592972 256 ntBASIC1.84□□□□□ -2.11
CLCN3P51790 AL359851.1-201ENST00000569460 4997 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CLCN3P51790 RNU1-22P-201ENST00000363334 158 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 Y_RNA.292-201ENST00000364904 97 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 Y_RNA.304-201ENST00000365011 112 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 SNORD116-13-201ENST00000384408 92 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 Y_RNA.515-201ENST00000384535 112 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
CLCN3P51790 RNU6-763P-201ENST00000390865 106 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 MIR1298-201ENST00000408783 112 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 HMGN2P19-201ENST00000425149 265 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 AC024067.1-201ENST00000426199 223 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 RPS20P10-201ENST00000451209 253 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.83□□□□□ -2.12
CLCN3P51790 AC010409.1-201ENST00000487382 476 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 RNA5SP20-201ENST00000515976 84 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 RNU7-99P-201ENST00000516271 62 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 RNA5SP481-201ENST00000516814 122 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 AC004832.4-201ENST00000608952 331 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 AC073349.3-201ENST00000617616 186 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 U6.108-201ENST00000637764 58 ntBASIC1.83□□□□□ -2.12
CLCN3P51790 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.82□□□□□ -2.12
CLCN3P51790 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CLCN3P51790 RNU6-653P-201ENST00000363074 106 ntBASIC1.82□□□□□ -2.12
CLCN3P51790 Y_RNA.200-201ENST00000364018 102 ntBASIC1.82□□□□□ -2.12
CLCN3P51790 MT-TR-201ENST00000387439 65 ntBASIC1.82□□□□□ -2.12
CLCN3P51790 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.82□□□□□ -2.12
CLCN3P51790 AC104332.1-201ENST00000440471 797 ntBASIC1.82□□□□□ -2.12
CLCN3P51790 U8.19-201ENST00000459095 133 ntBASIC1.82□□□□□ -2.12
CLCN3P51790 RNA5SP57-201ENST00000459463 123 ntBASIC1.82□□□□□ -2.12
CLCN3P51790 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.82□□□□□ -2.12
CLCN3P51790 MIR4438-201ENST00000585271 93 ntBASIC1.82□□□□□ -2.12
CLCN3P51790 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CLCN3P51790 MIR411-201ENST00000362239 96 ntBASIC1.81□□□□□ -2.12
CLCN3P51790 SNORD48-201ENST00000364953 64 ntBASIC1.81□□□□□ -2.12
CLCN3P51790 RNA5SP323-201ENST00000391094 133 ntBASIC1.81□□□□□ -2.12
CLCN3P51790 RNA5SP467-201ENST00000391274 118 ntBASIC1.81□□□□□ -2.12
CLCN3P51790 RNU4-62P-201ENST00000410125 130 ntBASIC1.81□□□□□ -2.12
CLCN3P51790 Y_RNA.590-201ENST00000410140 107 ntBASIC1.81□□□□□ -2.12
CLCN3P51790 RNU6-855P-201ENST00000410395 104 ntBASIC1.81□□□□□ -2.12
CLCN3P51790 Y_RNA.626-201ENST00000411288 95 ntBASIC1.81□□□□□ -2.12
CLCN3P51790 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.81□□□□□ -2.12
CLCN3P51790 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 145.4 ms