Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MIR4255-201ENST00000579351 72 ntBASIC2.05□□□□□ -2.08
CIITAP33076 AL096840.1-201ENST00000603287 93 ntBASIC2.05□□□□□ -2.08
CIITAP33076 AC013791.1-201ENST00000616619 62 ntBASIC2.05□□□□□ -2.08
CIITAP33076 uc_338.20-201ENST00000621563 178 ntBASIC2.05□□□□□ -2.08
CIITAP33076 RNU6-862P-201ENST00000362804 105 ntBASIC2.04□□□□□ -2.08
CIITAP33076 RNU6-653P-201ENST00000363074 106 ntBASIC2.04□□□□□ -2.08
CIITAP33076 SNORA16.1-201ENST00000364597 132 ntBASIC2.04□□□□□ -2.08
CIITAP33076 Y_RNA.304-201ENST00000365011 112 ntBASIC2.04□□□□□ -2.08
CIITAP33076 RNU2-64P-201ENST00000411315 191 ntBASIC2.04□□□□□ -2.08
CIITAP33076 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CIITAP33076 AC244636.1-201ENST00000421152 228 ntBASIC2.04□□□□□ -2.08
CIITAP33076 AL603825.1-201ENST00000438481 80 ntBASIC2.04□□□□□ -2.08
CIITAP33076 COX6CP14-201ENST00000469580 174 ntBASIC2.04□□□□□ -2.08
CIITAP33076 AC010409.1-201ENST00000487382 476 ntBASIC2.04□□□□□ -2.08
CIITAP33076 RPL36AP21-201ENST00000490372 323 ntBASIC2.04□□□□□ -2.08
CIITAP33076 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.04□□□□□ -2.08
CIITAP33076 RNY3P16-201ENST00000516338 101 ntBASIC2.04□□□□□ -2.08
CIITAP33076 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.04□□□□□ -2.08
CIITAP33076 AL773524.1-201ENST00000614065 229 ntBASIC2.04□□□□□ -2.08
CIITAP33076 RNA5SP276-201ENST00000362580 94 ntBASIC2.03□□□□□ -2.08
CIITAP33076 Y_RNA.199-201ENST00000364014 102 ntBASIC2.03□□□□□ -2.08
CIITAP33076 SNORA8-201ENST00000384574 139 ntBASIC2.03□□□□□ -2.08
CIITAP33076 MIR764-201ENST00000390811 85 ntBASIC2.03□□□□□ -2.08
CIITAP33076 MTCO2P33-201ENST00000402100 465 ntBASIC2.03□□□□□ -2.08
CIITAP33076 MIR1253-201ENST00000408273 105 ntBASIC2.03□□□□□ -2.08
CIITAP33076 RNA5SP489-201ENST00000410986 109 ntBASIC2.03□□□□□ -2.08
CIITAP33076 AL162725.1-201ENST00000435405 301 ntBASIC2.03□□□□□ -2.08
CIITAP33076 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.03□□□□□ -2.08
CIITAP33076 Y_RNA.679-201ENST00000516416 91 ntBASIC2.03□□□□□ -2.08
CIITAP33076 RNU7-115P-201ENST00000516433 55 ntBASIC2.03□□□□□ -2.08
CIITAP33076 RNU7-172P-201ENST00000517125 64 ntBASIC2.03□□□□□ -2.08
CIITAP33076 CBX3P4-201ENST00000538909 354 ntBASIC2.03□□□□□ -2.08
CIITAP33076 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.03□□□□□ -2.08
CIITAP33076 AL137100.2-201ENST00000555786 315 ntBASIC2.03□□□□□ -2.08
CIITAP33076 MIR4299-201ENST00000577899 72 ntBASIC2.03□□□□□ -2.08
CIITAP33076 MIR5692C2-201ENST00000577959 77 ntBASIC2.03□□□□□ -2.08
CIITAP33076 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.03□□□□□ -2.08
CIITAP33076 AL365265.1-201ENST00000621045 234 ntBASIC2.03□□□□□ -2.08
CIITAP33076 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
CIITAP33076 MIR411-201ENST00000362239 96 ntBASIC2.02□□□□□ -2.09
CIITAP33076 Y_RNA.297-201ENST00000364950 91 ntBASIC2.02□□□□□ -2.09
CIITAP33076 RNU6-1323P-201ENST00000384025 107 ntBASIC2.02□□□□□ -2.09
CIITAP33076 RNU6-136P-201ENST00000384663 107 ntBASIC2.02□□□□□ -2.09
CIITAP33076 MIR597-201ENST00000384968 97 ntBASIC2.02□□□□□ -2.09
CIITAP33076 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.02□□□□□ -2.09
CIITAP33076 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.02□□□□□ -2.09
CIITAP33076 AC117454.1-201ENST00000491120 168 ntBASIC2.02□□□□□ -2.09
CIITAP33076 RNU6-1146P-201ENST00000516282 102 ntBASIC2.02□□□□□ -2.09
CIITAP33076 RNU6-250P-201ENST00000516958 103 ntBASIC2.02□□□□□ -2.09
CIITAP33076 AP005660.1-201ENST00000522972 293 ntBASIC2.02□□□□□ -2.09
CIITAP33076 AC091178.2-201ENST00000584401 117 ntBASIC2.02□□□□□ -2.09
CIITAP33076 AC005786.1-201ENST00000588553 154 ntBASIC2.02□□□□□ -2.09
CIITAP33076 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.02□□□□□ -2.09
CIITAP33076 AC005972.2-201ENST00000604690 348 ntBASIC2.02□□□□□ -2.09
CIITAP33076 AC068647.2-201ENST00000637380 353 ntBASIC2.02□□□□□ -2.09
CIITAP33076 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
CIITAP33076 Y_RNA.83-201ENST00000363005 113 ntBASIC2.01□□□□□ -2.09
CIITAP33076 RNU6-899P-201ENST00000363947 107 ntBASIC2.01□□□□□ -2.09
CIITAP33076 RNU6-47P-201ENST00000383866 107 ntBASIC2.01□□□□□ -2.09
CIITAP33076 Y_RNA.785-201ENST00000384290 109 ntBASIC2.01□□□□□ -2.09
CIITAP33076 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CIITAP33076 RNU6-1186P-201ENST00000410429 97 ntBASIC2.01□□□□□ -2.09
CIITAP33076 HMGN2P19-201ENST00000425149 265 ntBASIC2.01□□□□□ -2.09
CIITAP33076 RNU7-99P-201ENST00000516271 62 ntBASIC2.01□□□□□ -2.09
CIITAP33076 AC100767.1-201ENST00000528178 123 ntBASIC2.01□□□□□ -2.09
CIITAP33076 AC024405.2-202ENST00000532731 184 ntBASIC2.01□□□□□ -2.09
CIITAP33076 MIR4308-201ENST00000580634 81 ntBASIC2.01□□□□□ -2.09
CIITAP33076 AP003357.1-201ENST00000604497 148 ntBASIC2.01□□□□□ -2.09
CIITAP33076 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.01□□□□□ -2.09
CIITAP33076 AC084768.2-201ENST00000622736 221 ntBASIC2.01□□□□□ -2.09
CIITAP33076 RNU4-10P-201ENST00000364383 140 ntBASIC2□□□□□ -2.09
CIITAP33076 CST2P1-201ENST00000425770 87 ntBASIC2□□□□□ -2.09
CIITAP33076 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2□□□□□ -2.09
CIITAP33076 RPS4XP11-201ENST00000446897 772 ntBASIC2□□□□□ -2.09
CIITAP33076 RPS26P45-201ENST00000471748 340 ntBASIC2□□□□□ -2.09
CIITAP33076 RPL23AP63-201ENST00000498752 471 ntBASIC2□□□□□ -2.09
CIITAP33076 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2□□□□□ -2.09
CIITAP33076 MIR3683-201ENST00000580847 82 ntBASIC2□□□□□ -2.09
CIITAP33076 AC073413.2-201ENST00000604332 360 ntBASIC2□□□□□ -2.09
CIITAP33076 MIR548AY-201ENST00000617669 107 ntBASIC2□□□□□ -2.09
CIITAP33076 Y_RNA.338-201ENST00000365320 114 ntBASIC1.99□□□□□ -2.09
CIITAP33076 Y_RNA.572-201ENST00000384757 98 ntBASIC1.99□□□□□ -2.09
CIITAP33076 SNORA48.1-201ENST00000390879 135 ntBASIC1.99□□□□□ -2.09
CIITAP33076 RNU6-918P-201ENST00000391219 106 ntBASIC1.99□□□□□ -2.09
CIITAP33076 HSPE1P21-201ENST00000438283 308 ntBASIC1.99□□□□□ -2.09
CIITAP33076 HMGN2P23-201ENST00000456759 269 ntBASIC1.99□□□□□ -2.09
CIITAP33076 AL163195.1-201ENST00000496941 348 ntBASIC1.99□□□□□ -2.09
CIITAP33076 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.99□□□□□ -2.09
CIITAP33076 RNVU1-2-201ENST00000516326 135 ntBASIC1.99□□□□□ -2.09
CIITAP33076 Y_RNA.700-201ENST00000516806 100 ntBASIC1.99□□□□□ -2.09
CIITAP33076 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.99□□□□□ -2.09
CIITAP33076 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CIITAP33076 MIR4419B-201ENST00000577260 68 ntBASIC1.99□□□□□ -2.09
CIITAP33076 RNA5SP99-201ENST00000364020 114 ntBASIC1.98□□□□□ -2.09
CIITAP33076 SNORA36B-201ENST00000410438 131 ntBASIC1.98□□□□□ -2.09
CIITAP33076 MTND5P15-201ENST00000434246 349 ntBASIC1.98□□□□□ -2.09
CIITAP33076 AL606517.2-201ENST00000442855 241 ntBASIC1.98□□□□□ -2.09
CIITAP33076 Y_RNA.644-201ENST00000459006 113 ntBASIC1.98□□□□□ -2.09
CIITAP33076 RN7SL274P-201ENST00000492268 272 ntBASIC1.98□□□□□ -2.09
CIITAP33076 RNU6-1278P-201ENST00000516130 107 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms