Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR515-2-201ENST00000384883 83 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 MIR515-1-201ENST00000384884 83 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 RNA5SP501-201ENST00000410990 112 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 AC245047.4-201ENST00000433189 144 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.28□□□□□ -2.04
SMARCA1P28370 RNU7-116P-201ENST00000516940 62 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 RNU6-1096P-201ENST00000517089 102 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.28□□□□□ -2.04
SMARCA1P28370 AC084364.2-201ENST00000546924 395 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 AC127455.1-201ENST00000565496 145 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 AL627230.6-201ENST00000611129 280 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 MIR6079-201ENST00000635807 62 ntBASIC2.28□□□□□ -2.04
SMARCA1P28370 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SMARCA1P28370 AC018630.2-201ENST00000534866 2403 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 MIR411-201ENST00000362239 96 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 RNU6-1205P-201ENST00000363625 106 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 Y_RNA.262-201ENST00000364641 102 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 RNU6-923P-201ENST00000364753 107 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 RNA5SP160-201ENST00000364866 120 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 Y_RNA.293-201ENST00000364908 93 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 SNORA48.1-201ENST00000390879 135 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 RNA5SP212-201ENST00000391223 107 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 AL606517.2-201ENST00000442855 241 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.27□□□□□ -2.05
SMARCA1P28370 AC108210.2-201ENST00000503681 201 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.27□□□□□ -2.05
SMARCA1P28370 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.27□□□□□ -2.05
SMARCA1P28370 AC100767.1-201ENST00000528178 123 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 DEFB122-202ENST00000569013 197 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 AC022217.4-201ENST00000604389 163 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 AL773524.1-201ENST00000614065 229 ntBASIC2.27□□□□□ -2.05
SMARCA1P28370 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SMARCA1P28370 SNORA72-201ENST00000384339 132 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 Y_RNA.572-201ENST00000384757 98 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 RNU2-40P-201ENST00000410833 196 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 MTND5P15-201ENST00000434246 349 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.26□□□□□ -2.05
SMARCA1P28370 RPL23AP54-201ENST00000495129 419 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.26□□□□□ -2.05
SMARCA1P28370 MRPS17P9-201ENST00000511924 393 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 CBX3P4-201ENST00000538909 354 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 AL929325.1-201ENST00000603096 117 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 AL096840.1-201ENST00000603287 93 ntBASIC2.26□□□□□ -2.05
SMARCA1P28370 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.26□□□□□ -2.05
SMARCA1P28370 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
SMARCA1P28370 RNU6-1019P-201ENST00000364424 107 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 Y_RNA.308-201ENST00000365043 101 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 RNU6-47P-201ENST00000383866 107 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 RNU6-144P-201ENST00000383951 107 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 MIR626-201ENST00000385032 94 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 MIR520G-201ENST00000385064 90 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
SMARCA1P28370 RNA5SP109-201ENST00000391010 116 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 AC019129.1-201ENST00000403786 261 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 RNU6-383P-201ENST00000410864 94 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 RPS27P1-201ENST00000450552 247 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 Y_RNA.644-201ENST00000459006 113 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 AC107393.1-201ENST00000512403 346 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 Y_RNA.674-201ENST00000516362 113 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 RNU6-1291P-201ENST00000516591 104 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.25□□□□□ -2.05
SMARCA1P28370 AC011604.1-201ENST00000545978 196 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 SUB1P4-201ENST00000566062 339 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 MIR4308-201ENST00000580634 81 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 AC069114.2-201ENST00000604699 304 ntBASIC2.25□□□□□ -2.05
SMARCA1P28370 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
SMARCA1P28370 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
SMARCA1P28370 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
SMARCA1P28370 AC100821.1-201ENST00000523153 2479 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 Y_RNA.24-201ENST00000362508 103 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 Y_RNA.785-201ENST00000384290 109 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 RNU6-493P-201ENST00000391321 108 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 Y_RNA.700-201ENST00000516806 100 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 RNU6-341P-201ENST00000516973 96 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 SNORA81.3-201ENST00000517283 198 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 Y_RNA.802-201ENST00000614892 130 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.24□□□□□ -2.05
SMARCA1P28370 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.24□□□□□ -2.05
SMARCA1P28370 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.24□□□□□ -2.05
SMARCA1P28370 RNU6-674P-201ENST00000363831 107 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 Y_RNA.267-201ENST00000364679 109 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 RNU6-1080P-201ENST00000383982 107 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 MT-TR-201ENST00000387439 65 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 U8.13-201ENST00000390842 128 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 RNU6-918P-201ENST00000391219 106 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 MIR1278-201ENST00000408753 81 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 RNU2-64P-201ENST00000411315 191 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.23□□□□□ -2.05
SMARCA1P28370 AC233266.1-201ENST00000454518 96 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 snoU13.23-201ENST00000458863 104 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 RNU6-717P-201ENST00000459076 104 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
SMARCA1P28370 AC242852.1-201ENST00000612151 96 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 AC244015.1-201ENST00000622301 99 ntBASIC2.23□□□□□ -2.05
SMARCA1P28370 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
SMARCA1P28370 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
SMARCA1P28370 Y_RNA.29-201ENST00000362570 113 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 snoU2_19.4-201ENST00000364329 80 ntBASIC2.22□□□□□ -2.05
SMARCA1P28370 RNU6-969P-201ENST00000383900 105 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms