Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU7-99P-201ENST00000516271 62 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 RNU1-142P-201ENST00000516682 145 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.45□□□□□ -2.18
HOXD4P09016 AC012433.1-201ENST00000588916 398 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 AC037487.3-201ENST00000606668 112 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 AC004832.4-201ENST00000608952 331 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.45□□□□□ -2.18
HOXD4P09016 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.45□□□□□ -2.18
HOXD4P09016 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
HOXD4P09016 Y_RNA.14-201ENST00000362415 103 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 Y_RNA.796-201ENST00000364268 102 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 Y_RNA.799-201ENST00000364992 102 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 Y_RNA.310-201ENST00000365063 113 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 RNU6-514P-201ENST00000384208 107 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 RNU6-376P-201ENST00000384731 106 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 MIR934-201ENST00000401241 83 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.44□□□□□ -2.18
HOXD4P09016 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.44□□□□□ -2.18
HOXD4P09016 AC024067.1-201ENST00000426199 223 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 HSPE1P24-201ENST00000450782 238 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 RPS20P10-201ENST00000451209 253 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 AC009474.2-201ENST00000451383 136 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 RNU6-1132P-201ENST00000459214 107 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 RPS26P45-201ENST00000471748 340 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 RNU6-1278P-201ENST00000516130 107 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 AC024995.1-201ENST00000523014 93 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 AC084364.2-201ENST00000546924 395 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 SUB1P4-201ENST00000566062 339 ntBASIC1.44□□□□□ -2.18
HOXD4P09016 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
HOXD4P09016 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
HOXD4P09016 AP000648.3-201ENST00000623539 4507 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.43□□□□□ -2.18
HOXD4P09016 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
HOXD4P09016 Y_RNA.118-201ENST00000363300 101 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 RNU6-1019P-201ENST00000364424 107 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 RNU6-60P-201ENST00000364792 103 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 Y_RNA.327-201ENST00000365201 102 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 Y_RNA.341-201ENST00000365341 102 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 Y_RNA.368-201ENST00000365547 113 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 RNU6-662P-201ENST00000384253 104 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 RNU6-136P-201ENST00000384663 107 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 MIR30A-201ENST00000385092 71 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 MIR518E-201ENST00000385252 88 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
HOXD4P09016 SNORA67.6-201ENST00000391093 99 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 RNA5SP511-201ENST00000410487 115 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 AC004965.1-201ENST00000413033 213 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 AL606517.2-201ENST00000442855 241 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 MTND4LP30-201ENST00000454092 297 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 AC004817.2-201ENST00000561794 651 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 AC015720.1-201ENST00000565251 277 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 MIR4285-201ENST00000581001 85 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 AC062037.2-201ENST00000610137 73 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 U2.14-201ENST00000615943 113 ntBASIC1.43□□□□□ -2.18
HOXD4P09016 Y_RNA.116-201ENST00000363292 103 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 RNU6-112P-201ENST00000363599 104 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 RNU6-1048P-201ENST00000364054 107 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 RNU6-801P-201ENST00000364087 105 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 Y_RNA.456-201ENST00000384232 111 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 Y_RNA.562-201ENST00000384695 113 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 RNU6-1248P-201ENST00000391096 64 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 RNU2-14P-201ENST00000411053 191 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 AC010154.1-201ENST00000425857 269 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 HSPE1P21-201ENST00000438283 308 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 RNU1-98P-201ENST00000458992 160 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 SNORA27.4-201ENST00000516650 95 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.42□□□□□ -2.18
HOXD4P09016 AL512605.2-201ENST00000592972 256 ntBASIC1.42□□□□□ -2.18
HOXD4P09016 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.42□□□□□ -2.18
HOXD4P09016 Y_RNA.44-201ENST00000362676 108 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 RNU1-42P-201ENST00000364033 160 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 Y_RNA.217-201ENST00000364214 105 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 Y_RNA.275-201ENST00000364726 110 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 RNU6-392P-201ENST00000364926 101 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 Y_RNA.307-201ENST00000365022 117 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 RNU6-296P-201ENST00000384608 107 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 RNA5SP109-201ENST00000391010 116 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 SNORA26.5-201ENST00000391215 123 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 AL603910.2-201ENST00000407268 136 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 RN7SKP101-201ENST00000411376 320 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 AL162725.1-201ENST00000435405 301 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 RPS27P1-201ENST00000450552 247 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 Y_RNA.641-201ENST00000459414 105 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 AC091021.1-201ENST00000468051 388 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 MTND1P19-201ENST00000511780 315 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 Y_RNA.680-201ENST00000516441 93 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 RNA5SP437-201ENST00000517249 129 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.41□□□□□ -2.18
HOXD4P09016 AC136628.3-201ENST00000521868 290 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 AC091178.2-201ENST00000584401 117 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 AC022217.4-201ENST00000604389 163 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 AL645939.4-201ENST00000604495 135 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.41□□□□□ -2.18
HOXD4P09016 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.41□□□□□ -2.18
HOXD4P09016 MIR6079-201ENST00000635807 62 ntBASIC1.41□□□□□ -2.18
HOXD4P09016 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.41□□□□□ -2.18
HOXD4P09016 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms