Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 HSPE1P21-201ENST00000438283 308 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 RNU7-141P-201ENST00000459304 62 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 RPL23AP42-201ENST00000471152 471 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 AC073413.2-201ENST00000604332 360 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 AC090425.1-201ENST00000610007 140 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 ZNF355P-201ENST00000427301 3216 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-1048P-201ENST00000364054 107 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-1019P-201ENST00000364424 107 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 RNA5SP160-201ENST00000364866 120 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 Y_RNA.304-201ENST00000365011 112 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-144P-201ENST00000383951 107 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 SNORA8-201ENST00000384574 139 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 SNORA80E-201ENST00000384744 137 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 MIR520G-201ENST00000385064 90 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 MTCO2P33-201ENST00000402100 465 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 AC019129.1-201ENST00000403786 261 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 AL021397.1-201ENST00000451806 248 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 RNU7-94P-201ENST00000459576 63 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 AC025033.1-201ENST00000463883 194 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 AL163195.1-201ENST00000496941 348 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 SNORD116-28-201ENST00000516123 91 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 AC091178.2-201ENST00000584401 117 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 SNRPGP19-201ENST00000603826 189 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 MIR548AY-201ENST00000617669 107 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 U1.36-201ENST00000620684 176 ntBASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.27□□□□□ -2.05
PCDHA1Q9Y5I3 AC134026.1-201ENST00000623249 2239 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 AC018630.2-201ENST00000534866 2403 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 Y_RNA.200-201ENST00000364018 102 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 RNU4-13P-201ENST00000364019 141 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 SNORA6-201ENST00000384033 151 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 MIR764-201ENST00000390811 85 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 SNORD23.1-201ENST00000408212 104 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 RNA5SP450-201ENST00000411206 102 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 RNU2-19P-201ENST00000517288 84 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 AC015712.3-201ENST00000559380 164 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 POLR3GP1-201ENST00000594073 261 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 AC069114.2-201ENST00000604699 304 ntBASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.26□□□□□ -2.05
PCDHA1Q9Y5I3 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 AC245060.5-201ENST00000610778 3293 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-200P-201ENST00000364743 107 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 SNORA72-201ENST00000384339 132 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-136P-201ENST00000384663 107 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 MIR562-201ENST00000384894 95 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 U8.13-201ENST00000390842 128 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 MIR1298-201ENST00000408783 112 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 RNA5SP501-201ENST00000410990 112 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 Y_RNA.626-201ENST00000411288 95 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 AC117454.1-201ENST00000491120 168 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 RNVU1-2-201ENST00000516326 135 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 AC024405.2-202ENST00000532731 184 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 AC084364.2-201ENST00000546924 395 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 AC127455.1-201ENST00000565496 145 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 SUB1P4-201ENST00000566062 339 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 AC130289.1-201ENST00000577321 73 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 MIR5688-201ENST00000580619 83 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 AC002984.1-201ENST00000591692 448 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 AC078899.2-201ENST00000595282 212 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 MIR6079-201ENST00000635807 62 ntBASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
PCDHA1Q9Y5I3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 AC069257.2-201ENST00000441819 155 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 RPS4XP11-201ENST00000446897 772 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 AC055731.1-201ENST00000474387 401 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 AC108210.2-201ENST00000503681 201 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-237P-201ENST00000515985 71 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 Y_RNA.700-201ENST00000516806 100 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 RNU1-40P-201ENST00000516816 164 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 RNU1-97P-201ENST00000516872 164 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-341P-201ENST00000516973 96 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 AL358944.1-201ENST00000528537 144 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 MIR5094-201ENST00000578766 85 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 MIR4769-201ENST00000584126 77 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 AL365265.1-201ENST00000621045 234 ntBASIC2.24□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-1205P-201ENST00000363625 106 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 Y_RNA.199-201ENST00000364014 102 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 Y_RNA.262-201ENST00000364641 102 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 SNORA36B-201ENST00000410438 131 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 AC245047.4-201ENST00000433189 144 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 AC091021.1-201ENST00000468051 388 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-295P-201ENST00000516901 104 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-1096P-201ENST00000517089 102 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 MIR6840-201ENST00000611937 71 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 AC012640.5-201ENST00000623897 319 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 AC068700.1-201ENST00000565862 3754 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 AC100821.1-201ENST00000523153 2479 ntBASIC2.23□□□□□ -2.05
PCDHA1Q9Y5I3 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 149.7 ms