| APLN | Q9ULZ1 | MTND4P33-201 | ENST00000556706 | 766 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR3165-201 | ENST00000579874 | 75 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR4791-201 | ENST00000607666 | 84 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | SRP54-214 | ENST00000630962 | 162 nt | TSL 5 BASIC | -1.04 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | ZNF299P-201 | ENST00000406845 | 1804 nt | BASIC | -1.04 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR30D-201 | ENST00000362283 | 70 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-1286P-201 | ENST00000383871 | 107 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.413-201 | ENST00000384007 | 102 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-245P-201 | ENST00000384020 | 107 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR522-201 | ENST00000385071 | 87 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MT-TF-201 | ENST00000387314 | 71 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AL121872.1-201 | ENST00000420327 | 281 nt | TSL 5 BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | LINC01707-201 | ENST00000425517 | 627 nt | TSL 3 BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MTND4P18-201 | ENST00000447010 | 465 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.754-201 | ENST00000476024 | 102 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | LINC02353-201 | ENST00000515181 | 849 nt | TSL 1 (best) BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-201P-201 | ENST00000517100 | 61 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC105029.1-201 | ENST00000520250 | 669 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC245297.2-201 | ENST00000610119 | 565 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.790-201 | ENST00000614282 | 102 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.782-201 | ENST00000614695 | 102 nt | BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | NFIA-AS1-206 | ENST00000630199 | 220 nt | TSL 5 BASIC | -1.05 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | HTN1-201 | ENST00000246896 | 580 nt | APPRIS P1 TSL 1 (best) BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-1244P-201 | ENST00000363614 | 108 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | SNORA20B-201 | ENST00000384220 | 132 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-291P-201 | ENST00000384720 | 107 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR518F-201 | ENST00000384973 | 87 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AL355314.2-201 | ENST00000427182 | 436 nt | TSL 3 BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC108059.2-201 | ENST00000434626 | 151 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AL137792.2-201 | ENST00000443484 | 235 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | HMGN2P32-201 | ENST00000444648 | 269 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-329P-201 | ENST00000459618 | 107 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AF186996.7-201 | ENST00000492781 | 209 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC104137.1-201 | ENST00000503625 | 385 nt | TSL 3 BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC055733.2-201 | ENST00000504737 | 340 nt | TSL 2 BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC009159.2-201 | ENST00000617603 | 606 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | U4.2-201 | ENST00000618561 | 85 nt | BASIC | -1.06 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | SNORD56.2-201 | ENST00000363242 | 71 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.498-201 | ENST00000384460 | 102 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR487A-201 | ENST00000385009 | 80 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR320B2-201 | ENST00000408479 | 138 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-387P-201 | ENST00000411331 | 105 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNA5SP20-201 | ENST00000515976 | 84 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-830P-201 | ENST00000516353 | 107 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | SNORA25.17-201 | ENST00000517184 | 124 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC093023.1-201 | ENST00000547375 | 507 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC020891.3-201 | ENST00000560011 | 363 nt | TSL 3 BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR3118-1-201 | ENST00000581787 | 76 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC022960.3-201 | ENST00000619794 | 441 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC126544.2-201 | ENST00000625174 | 749 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC019226.2-201 | ENST00000625973 | 424 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC073869.9-201 | ENST00000641610 | 120 nt | BASIC | -1.07 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | SNORA27.1-201 | ENST00000362604 | 124 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.311-201 | ENST00000365068 | 96 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-468P-201 | ENST00000384003 | 109 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR588-201 | ENST00000384900 | 83 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | SNORA40.2-201 | ENST00000390847 | 128 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | SSR1P2-201 | ENST00000415208 | 787 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AL500527.2-201 | ENST00000454105 | 95 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | snoU13.2-201 | ENST00000459201 | 104 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC011352.1-201 | ENST00000512300 | 793 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-1265P-201 | ENST00000516342 | 103 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC040926.1-201 | ENST00000530195 | 238 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC091544.5-202 | ENST00000568297 | 374 nt | TSL 3 BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | POLR3GP1-201 | ENST00000594073 | 261 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC137590.2-201 | ENST00000619709 | 240 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC068137.4-201 | ENST00000638485 | 296 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MT-ND1-201 | ENST00000361390 | 956 nt | APPRIS P1 BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.22-201 | ENST00000362492 | 102 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU4-1-201 | ENST00000363925 | 141 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.415-201 | ENST00000384012 | 112 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-883P-201 | ENST00000384597 | 107 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU4-83P-201 | ENST00000410863 | 133 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AL354994.1-201 | ENST00000445967 | 194 nt | TSL 5 BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | SNORA25.13-201 | ENST00000516395 | 103 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-765P-201 | ENST00000516916 | 99 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | RNU6-1003P-201 | ENST00000517099 | 105 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | MIR3115-201 | ENST00000577915 | 68 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | BNIP3P39-201 | ENST00000601077 | 554 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC026741.1-201 | ENST00000605892 | 482 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | AC097460.3-201 | ENST00000623099 | 442 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| APLN | Q9ULZ1 | Y_RNA.13-201 | ENST00000362403 | 112 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | SNORD115-8-201 | ENST00000363856 | 82 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | SNORD50B-201 | ENST00000364995 | 70 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | snoU2-30.1-201 | ENST00000365012 | 70 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | SNORD115-38-201 | ENST00000365037 | 82 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | RNU6-715P-201 | ENST00000365204 | 103 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | Y_RNA.368-201 | ENST00000365547 | 113 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | Y_RNA.484-201 | ENST00000384389 | 103 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | Y_RNA.536-201 | ENST00000384621 | 113 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | MIR9-2-201 | ENST00000384838 | 87 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | MIR558-201 | ENST00000384920 | 94 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | OPRPN-201 | ENST00000399575 | 1040 nt | APPRIS P1 TSL 1 (best) BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | MIR450B-201 | ENST00000401182 | 78 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | MTCO2P27-201 | ENST00000420740 | 428 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | LINC00894-208 | ENST00000455777 | 284 nt | TSL 2 BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | SNORA13-201 | ENST00000458790 | 133 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | AC018710.1-201 | ENST00000506509 | 158 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | LINC02095-202 | ENST00000543512 | 323 nt | TSL 3 BASIC | -1.1 | □□□□□ -2.59 | | |
| APLN | Q9ULZ1 | AC007631.1-201 | ENST00000578545 | 189 nt | TSL 3 BASIC | -1.1 | □□□□□ -2.59 | | |