Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
LHX3Q9UBR4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.172-201ENST00000363765 102 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 RNU4-41P-201ENST00000364426 143 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 SNORA2.2-201ENST00000365473 135 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.361-201ENST00000365515 120 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.446-201ENST00000384178 104 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 SNORD116-13-201ENST00000384408 92 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 RNU6-939P-201ENST00000384634 107 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 MIR1287-201ENST00000408492 90 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 MIR1285-1-201ENST00000408593 84 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.621-201ENST00000411065 96 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 RNU6-1199P-201ENST00000411249 104 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 AC236972.2-201ENST00000434979 310 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 Z98949.2-201ENST00000440996 144 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 HSPE1P13-201ENST00000451143 297 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 AL133373.1-201ENST00000497098 94 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 RNU6-322P-201ENST00000516010 103 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 RN7SKP179-201ENST00000516126 217 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 RNU6-1116P-201ENST00000517269 99 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.09□□□□□ -2.23
LHX3Q9UBR4 AC090049.2-201ENST00000550377 109 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.09□□□□□ -2.23
LHX3Q9UBR4 MIR4295-201ENST00000585286 85 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 AC092447.9-201ENST00000603395 144 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.804-201ENST00000615262 101 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 MIR4272-201ENST00000635924 64 ntBASIC1.09□□□□□ -2.23
LHX3Q9UBR4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
LHX3Q9UBR4 RNU6-1115P-201ENST00000362490 106 ntBASIC1.08□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.226-201ENST00000364337 114 ntBASIC1.08□□□□□ -2.24
LHX3Q9UBR4 RNU6-1080P-201ENST00000383982 107 ntBASIC1.08□□□□□ -2.24
LHX3Q9UBR4 MIR499A-201ENST00000384903 122 ntBASIC1.08□□□□□ -2.24
LHX3Q9UBR4 AL451046.2-201ENST00000403074 277 ntBASIC1.08□□□□□ -2.24
LHX3Q9UBR4 RPS4XP11-201ENST00000446897 772 ntBASIC1.08□□□□□ -2.24
LHX3Q9UBR4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.08□□□□□ -2.24
LHX3Q9UBR4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
LHX3Q9UBR4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.07□□□□□ -2.24
LHX3Q9UBR4 MIRLET7C-201ENST00000362160 84 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 SNORA25-201ENST00000384384 134 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 AF228730.4-201ENST00000421457 183 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 AL162725.1-201ENST00000435405 301 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.07□□□□□ -2.24
LHX3Q9UBR4 AC087343.1-201ENST00000477341 475 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 RNU6-436P-201ENST00000516171 114 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 RNU6-917P-201ENST00000516294 104 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 RNU7-40P-201ENST00000516397 64 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.07□□□□□ -2.24
LHX3Q9UBR4 MIR4795-201ENST00000584182 89 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 AL117336.2-201ENST00000602435 335 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 SNORD114-21-201ENST00000606412 72 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 BX284668.6-201ENST00000606899 438 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.07□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.80-201ENST00000362996 102 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 RNU4-73P-201ENST00000363164 141 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 SNORD68-201ENST00000363214 84 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.485-201ENST00000384395 102 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 MTND1P14-201ENST00000427400 950 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 RNU6-947P-201ENST00000516264 106 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 MIR5188-201ENST00000583467 113 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 AL357312.1-201ENST00000603879 298 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 AL022345.2-201ENST00000606307 135 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 MIR8070-201ENST00000616510 88 ntBASIC1.06□□□□□ -2.24
LHX3Q9UBR4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.06□□□□□ -2.24
LHX3Q9UBR4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.06□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.5-201ENST00000362334 102 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.39-201ENST00000362620 98 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.315-201ENST00000365117 102 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 RNU6-1175P-201ENST00000365200 107 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.329-201ENST00000365209 107 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 SNORD41-201ENST00000386967 70 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 RNU2-61P-201ENST00000411069 191 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 PIGPP3-201ENST00000425307 415 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 AC104332.1-201ENST00000440471 797 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.05□□□□□ -2.24
LHX3Q9UBR4 MTND3P22-201ENST00000510932 243 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 SNORA31.4-201ENST00000516049 129 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 RNU4-77P-201ENST00000516692 156 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 RNA5SP102-201ENST00000516865 106 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 RNA5SP404-201ENST00000517118 132 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 SNORA70.22-201ENST00000517160 124 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 AC022441.3-201ENST00000605737 136 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 AC091925.1-201ENST00000623204 462 ntBASIC1.05□□□□□ -2.24
LHX3Q9UBR4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
LHX3Q9UBR4 SNORD114-27-201ENST00000363766 70 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.230-201ENST00000364348 109 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 MIR222-201ENST00000384992 110 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.579-201ENST00000390939 94 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 MIR891A-201ENST00000401237 79 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.04□□□□□ -2.24
LHX3Q9UBR4 AL117351.2-201ENST00000513571 157 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 SNORA31.2-201ENST00000516019 134 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.673-201ENST00000516306 88 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 RN7SKP295-201ENST00000517264 153 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 AC011604.1-201ENST00000545978 196 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 SNORD58B-201ENST00000607313 66 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 AC004832.4-201ENST00000608952 331 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 AC027335.2-201ENST00000624030 375 ntBASIC1.04□□□□□ -2.24
LHX3Q9UBR4 MIR96-201ENST00000362288 78 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms