Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 AC098934.3-201ENST00000430450 190 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 MTCO3P10-201ENST00000455912 772 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 RNU6-329P-201ENST00000459618 107 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 RNU6-566P-201ENST00000516790 107 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 MTND2P38-201ENST00000522536 667 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 AC022616.4-201ENST00000522985 181 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 AC012433.1-201ENST00000588916 398 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 AC243829.3-201ENST00000622177 108 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.358-201ENST00000365491 99 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 RNU6-1310P-201ENST00000384153 107 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.473-201ENST00000384333 102 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 SNORD28B-201ENST00000390993 75 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 AL031003.1-201ENST00000404229 172 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 AL353997.1-201ENST00000432936 108 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 MTND4LP16-201ENST00000440828 295 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 AC109635.3-201ENST00000529536 185 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 AC018462.2-201ENST00000605375 395 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 MIR6715A-201ENST00000615929 79 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 AC091925.1-201ENST00000623204 462 ntBASIC0.15□□□□□ -2.39
VCX3AQ9NNX9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 MIR18A-201ENST00000362310 71 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.51-201ENST00000362725 102 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 SNORD50B-201ENST00000364995 70 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.370-201ENST00000365589 108 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 RNU6-1013P-201ENST00000384180 107 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 MIR520H-201ENST00000385126 88 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 RNU6-131P-201ENST00000391144 107 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 SNORD12B-201ENST00000410433 91 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 AL139396.1-201ENST00000421137 167 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 NDUFA4P2-201ENST00000489989 244 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 AC026782.1-201ENST00000512952 449 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 RNU6-1053P-201ENST00000515930 101 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 AC055872.1-201ENST00000570978 278 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 MIR4790-201ENST00000577799 79 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 AC018638.8-201ENST00000588755 281 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 AL162730.1-201ENST00000605734 292 ntBASIC0.14□□□□□ -2.39
VCX3AQ9NNX9 MIR377-201ENST00000362145 69 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 RNU6-349P-201ENST00000362402 107 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 RNU6-1301P-201ENST00000362724 104 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.172-201ENST00000363765 102 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 RNU4-45P-201ENST00000365469 141 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 VTRNA1-3-201ENST00000365645 89 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 AC074085.1-201ENST00000413598 418 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 AC009161.1-201ENST00000417306 376 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 SNRPGP10-201ENST00000432323 225 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 MTND5P5-201ENST00000503764 376 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.688-201ENST00000516565 95 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 RNU6-1016P-201ENST00000516689 94 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 AL355375.2-201ENST00000574825 175 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 MIR4431-201ENST00000579990 94 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 MIR548AR-201ENST00000582191 57 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 AL512605.2-201ENST00000592972 256 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 AC004467.1-201ENST00000615678 330 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 AC015726.2-201ENST00000620112 122 ntBASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.13□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.148-201ENST00000363557 117 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.338-201ENST00000365320 114 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.368-201ENST00000365547 113 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 MIR520F-201ENST00000384824 87 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.594-201ENST00000410373 140 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 RNU2-61P-201ENST00000411069 191 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 snoU13.21-201ENST00000459368 105 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 RPS29P1-201ENST00000465274 159 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 RNU6-408P-201ENST00000515910 100 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 MIR5000-201ENST00000577717 103 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 MIR3612-201ENST00000579753 87 ntBASIC0.12□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.2-201ENST00000362330 96 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 SNORD45.3-201ENST00000363836 72 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 RNU6-961P-201ENST00000363893 105 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.301-201ENST00000364990 103 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 RNU6-396P-201ENST00000365369 105 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.376-201ENST00000365638 108 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 SNORA72-201ENST00000384339 132 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 MIR570-201ENST00000384917 97 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 MT-TN-201ENST00000387400 73 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 RNA5SP299-201ENST00000391203 116 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 CHEK2P4-201ENST00000450340 246 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 AC093534.1-201ENST00000504977 132 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 AC116353.2-201ENST00000505332 712 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 AC011352.1-201ENST00000512300 793 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 RNU6-496P-201ENST00000516145 99 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.670-201ENST00000516255 105 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 RNU6-506P-201ENST00000516553 94 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 RNU6-314P-201ENST00000516574 104 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 MIR4769-201ENST00000584126 77 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 AC006380.1-201ENST00000603598 186 ntBASIC0.11□□□□□ -2.39
VCX3AQ9NNX9 AC092634.7-201ENST00000621022 103 ntBASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms