Protein–RNA interactions for Protein: Q9N2J8

HERV-H_2q24.1 provirus ancestral Env polyprotein, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q9N2J8 AC091544.4-201ENST00000555268 342 ntBASIC1.89□□□□□ -2.11
Q9N2J8 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.89□□□□□ -2.11
Q9N2J8 AC013791.1-201ENST00000616619 62 ntBASIC1.89□□□□□ -2.11
Q9N2J8 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.89□□□□□ -2.11
Q9N2J8 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
Q9N2J8 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
Q9N2J8 AC100821.1-201ENST00000523153 2479 ntBASIC1.88□□□□□ -2.11
Q9N2J8 U8.2-201ENST00000363156 134 ntBASIC1.88□□□□□ -2.11
Q9N2J8 Y_RNA.267-201ENST00000364679 109 ntBASIC1.88□□□□□ -2.11
Q9N2J8 U8.7-201ENST00000364940 136 ntBASIC1.88□□□□□ -2.11
Q9N2J8 RNU6-211P-201ENST00000384047 107 ntBASIC1.88□□□□□ -2.11
Q9N2J8 RNA5SP109-201ENST00000391010 116 ntBASIC1.88□□□□□ -2.11
Q9N2J8 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.88□□□□□ -2.11
Q9N2J8 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.88□□□□□ -2.11
Q9N2J8 SNORD2.1-201ENST00000458762 69 ntBASIC1.88□□□□□ -2.11
Q9N2J8 RNU6-717P-201ENST00000459076 104 ntBASIC1.88□□□□□ -2.11
Q9N2J8 RNA5SP57-201ENST00000459463 123 ntBASIC1.88□□□□□ -2.11
Q9N2J8 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.88□□□□□ -2.11
Q9N2J8 IGKV3-31-201ENST00000523109 329 ntBASIC1.88□□□□□ -2.11
Q9N2J8 AL358944.1-201ENST00000528537 144 ntBASIC1.88□□□□□ -2.11
Q9N2J8 AC024405.2-202ENST00000532731 184 ntBASIC1.88□□□□□ -2.11
Q9N2J8 AC127455.1-201ENST00000565496 145 ntBASIC1.88□□□□□ -2.11
Q9N2J8 MIR4282-201ENST00000583613 67 ntBASIC1.88□□□□□ -2.11
Q9N2J8 MIR4448-201ENST00000584360 86 ntBASIC1.88□□□□□ -2.11
Q9N2J8 AC022217.4-201ENST00000604389 163 ntBASIC1.88□□□□□ -2.11
Q9N2J8 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.88□□□□□ -2.11
Q9N2J8 AL008718.3-201ENST00000610217 321 ntBASIC1.88□□□□□ -2.11
Q9N2J8 AC134026.1-201ENST00000623249 2239 ntBASIC1.88□□□□□ -2.11
Q9N2J8 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
Q9N2J8 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.88□□□□□ -2.11
Q9N2J8 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
Q9N2J8 Y_RNA.122-201ENST00000363331 96 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RNA5SP160-201ENST00000364866 120 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RNU6-296P-201ENST00000384608 107 ntBASIC1.87□□□□□ -2.11
Q9N2J8 Y_RNA.539-201ENST00000384635 107 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RNU6-950P-201ENST00000384651 107 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RNA5SP212-201ENST00000391223 107 ntBASIC1.87□□□□□ -2.11
Q9N2J8 SNORD58.1-201ENST00000391313 66 ntBASIC1.87□□□□□ -2.11
Q9N2J8 AL023284.1-201ENST00000403956 276 ntBASIC1.87□□□□□ -2.11
Q9N2J8 AL606517.2-201ENST00000442855 241 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RPS27P1-201ENST00000450552 247 ntBASIC1.87□□□□□ -2.11
Q9N2J8 AC233266.1-201ENST00000454518 96 ntBASIC1.87□□□□□ -2.11
Q9N2J8 U8.19-201ENST00000459095 133 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RNA5SP233-201ENST00000459153 113 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RPL23AP94-201ENST00000512518 302 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RNU6-1291P-201ENST00000516591 104 ntBASIC1.87□□□□□ -2.11
Q9N2J8 RNA5SP481-201ENST00000516814 122 ntBASIC1.87□□□□□ -2.11
Q9N2J8 AP002004.2-201ENST00000531656 154 ntBASIC1.87□□□□□ -2.11
Q9N2J8 AC011604.1-201ENST00000545978 196 ntBASIC1.87□□□□□ -2.11
Q9N2J8 MIR4643-201ENST00000577473 78 ntBASIC1.87□□□□□ -2.11
Q9N2J8 MIR5692C2-201ENST00000577959 77 ntBASIC1.87□□□□□ -2.11
Q9N2J8 AC242852.1-201ENST00000612151 96 ntBASIC1.87□□□□□ -2.11
Q9N2J8 AC073349.3-201ENST00000617616 186 ntBASIC1.87□□□□□ -2.11
Q9N2J8 AC244015.1-201ENST00000622301 99 ntBASIC1.87□□□□□ -2.11
Q9N2J8 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
Q9N2J8 Y_RNA.65-201ENST00000362846 100 ntBASIC1.86□□□□□ -2.11
Q9N2J8 RNU6-1205P-201ENST00000363625 106 ntBASIC1.86□□□□□ -2.11
Q9N2J8 RNU6-379P-201ENST00000363813 104 ntBASIC1.86□□□□□ -2.11
Q9N2J8 RNU6-144P-201ENST00000383951 107 ntBASIC1.86□□□□□ -2.11
Q9N2J8 SNORA67.3-201ENST00000384366 140 ntBASIC1.86□□□□□ -2.11
Q9N2J8 RNA5SP338-201ENST00000410495 85 ntBASIC1.86□□□□□ -2.11
Q9N2J8 RNU6-651P-201ENST00000411040 105 ntBASIC1.86□□□□□ -2.11
Q9N2J8 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.86□□□□□ -2.11
Q9N2J8 AL445646.1-201ENST00000431784 216 ntBASIC1.86□□□□□ -2.11
Q9N2J8 RPL23AP54-201ENST00000495129 419 ntBASIC1.86□□□□□ -2.11
Q9N2J8 RNU4-71P-201ENST00000516258 113 ntBASIC1.86□□□□□ -2.11
Q9N2J8 RNU2-56P-201ENST00000516826 190 ntBASIC1.86□□□□□ -2.11
Q9N2J8 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.86□□□□□ -2.11
Q9N2J8 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.86□□□□□ -2.11
Q9N2J8 AL442067.1-201ENST00000613261 223 ntBASIC1.86□□□□□ -2.11
Q9N2J8 Y_RNA.783-201ENST00000613546 102 ntBASIC1.86□□□□□ -2.11
Q9N2J8 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.86□□□□□ -2.11
Q9N2J8 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.86□□□□□ -2.11
Q9N2J8 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
Q9N2J8 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
Q9N2J8 SNORA36B-201ENST00000410438 131 ntBASIC1.85□□□□□ -2.11
Q9N2J8 Y_RNA.621-201ENST00000411065 96 ntBASIC1.85□□□□□ -2.11
Q9N2J8 AL139156.1-201ENST00000412785 841 ntBASIC1.85□□□□□ -2.11
Q9N2J8 AL356379.1-201ENST00000414105 126 ntBASIC1.85□□□□□ -2.11
Q9N2J8 AC009310.1-201ENST00000414414 451 ntBASIC1.85□□□□□ -2.11
Q9N2J8 AC244636.1-201ENST00000421152 228 ntBASIC1.85□□□□□ -2.11
Q9N2J8 Y_RNA.638-201ENST00000459374 113 ntBASIC1.85□□□□□ -2.11
Q9N2J8 RPL23AP63-201ENST00000498752 471 ntBASIC1.85□□□□□ -2.11
Q9N2J8 RNU6-111P-201ENST00000517179 105 ntBASIC1.85□□□□□ -2.11
Q9N2J8 RNA5SP437-201ENST00000517249 129 ntBASIC1.85□□□□□ -2.11
Q9N2J8 MIR4648-201ENST00000580107 72 ntBASIC1.85□□□□□ -2.11
Q9N2J8 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.85□□□□□ -2.11
Q9N2J8 AC005357.1-201ENST00000588399 301 ntBASIC1.85□□□□□ -2.11
Q9N2J8 AL773524.1-201ENST00000614065 229 ntBASIC1.85□□□□□ -2.11
Q9N2J8 AC092881.1-201ENST00000638218 2733 ntBASIC1.85□□□□□ -2.11
Q9N2J8 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
Q9N2J8 Y_RNA.76-201ENST00000362931 109 ntBASIC1.84□□□□□ -2.11
Q9N2J8 Y_RNA.269-201ENST00000364685 89 ntBASIC1.84□□□□□ -2.11
Q9N2J8 Y_RNA.293-201ENST00000364908 93 ntBASIC1.84□□□□□ -2.11
Q9N2J8 RNU6-338P-201ENST00000383888 105 ntBASIC1.84□□□□□ -2.11
Q9N2J8 SNORA70B-201ENST00000384210 135 ntBASIC1.84□□□□□ -2.11
Q9N2J8 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
Q9N2J8 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.84□□□□□ -2.11
Q9N2J8 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.84□□□□□ -2.11
Q9N2J8 SNORA31.17-201ENST00000516953 127 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms