Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR873-201ENST00000401120 77 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 UQCRBP2-201ENST00000447827 297 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 RNU6-1281P-201ENST00000516223 105 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 SNORA74.3-201ENST00000517108 154 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 MIR4300-201ENST00000581016 96 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 MIR3611-201ENST00000584484 83 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 Z99129.1-201ENST00000612510 255 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 AL591926.4-201ENST00000616895 298 ntBASIC0.28□□□□□ -2.36
USP42Q9H9J4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.27□□□□□ -2.37
USP42Q9H9J4 MIR410-201ENST00000362222 80 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 RNU6-654P-201ENST00000364373 107 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
USP42Q9H9J4 Y_RNA.414-201ENST00000384011 101 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 RNU6-35P-201ENST00000384530 107 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 MIR520C-201ENST00000385005 87 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AL354751.2-201ENST00000415471 210 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.27□□□□□ -2.37
USP42Q9H9J4 MRPS18CP6-201ENST00000423587 223 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AL392103.1-201ENST00000447000 198 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 U8.22-201ENST00000459141 133 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AC002350.1-201ENST00000490759 375 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 SNORA68.3-201ENST00000515906 83 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AF235103.2-201ENST00000525753 346 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AC018448.1-201ENST00000552843 316 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AC090617.3-201ENST00000573670 475 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 MIR3684-201ENST00000579779 74 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 MIR4764-201ENST00000580680 88 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AL162413.1-201ENST00000603198 110 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 AC078883.4-201ENST00000623218 367 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 MIR3974-201ENST00000637126 96 ntBASIC0.27□□□□□ -2.37
USP42Q9H9J4 RNU6-874P-201ENST00000362390 105 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 U8.5-201ENST00000364528 136 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 MIR452-201ENST00000385020 85 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 RNU6-1304P-201ENST00000411374 106 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.26□□□□□ -2.37
USP42Q9H9J4 DLGAP5P1-201ENST00000430307 464 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 USP9YP30-201ENST00000430729 455 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.26□□□□□ -2.37
USP42Q9H9J4 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.26□□□□□ -2.37
USP42Q9H9J4 RN7SKP12-201ENST00000516275 143 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 Y_RNA.706-201ENST00000516933 99 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 MIR4273-201ENST00000582824 84 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 MIR4762-201ENST00000585261 75 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 AC100812.1-201ENST00000607622 580 ntBASIC0.26□□□□□ -2.37
USP42Q9H9J4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.26□□□□□ -2.37
USP42Q9H9J4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
USP42Q9H9J4 RNY3P3-201ENST00000363816 102 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 AC117470.1-201ENST00000381974 330 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 USMG5P1-201ENST00000425964 177 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.25□□□□□ -2.37
USP42Q9H9J4 ELOCP24-201ENST00000456370 334 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 SNORA25.10-201ENST00000515926 124 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 RNU6-1088P-201ENST00000516850 104 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 MIR5701-3-201ENST00000578890 82 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 MIR5190-201ENST00000581537 80 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 MIR5701-1-201ENST00000585138 82 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 AC063944.3-201ENST00000609969 533 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 MIR5701-2-201ENST00000615634 82 ntBASIC0.25□□□□□ -2.37
USP42Q9H9J4 AC090625.1-201ENST00000357130 210 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 RNU6-369P-201ENST00000362515 102 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 RNY1P16-201ENST00000363063 111 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 Y_RNA.243-201ENST00000364481 109 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 Y_RNA.361-201ENST00000365515 120 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 Y_RNA.490-201ENST00000384413 102 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.24□□□□□ -2.37
USP42Q9H9J4 SNORD111-201ENST00000408139 94 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 MIR1827-201ENST00000408549 66 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 RNA5SP95-201ENST00000410319 137 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 RNU6-1148P-201ENST00000410992 104 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 AL390729.2-201ENST00000416137 156 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.24□□□□□ -2.37
USP42Q9H9J4 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.24□□□□□ -2.37
USP42Q9H9J4 AC074133.1-201ENST00000515696 183 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 SNORA18.7-201ENST00000516910 131 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 RNU6-273P-201ENST00000516937 96 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 MTND3P12-201ENST00000559068 328 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 AC104260.1-201ENST00000616660 539 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 AC024614.3-201ENST00000637860 256 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 MIR6759-201ENST00000638110 65 ntBASIC0.24□□□□□ -2.37
USP42Q9H9J4 SNORD14.1-201ENST00000365609 90 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 RNU6-318P-201ENST00000384283 103 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 Y_RNA.498-201ENST00000384460 102 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 Y_RNA.557-201ENST00000384680 107 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 MIR136-201ENST00000385207 82 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 SNORD105-201ENST00000386910 85 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 MIR190B-201ENST00000401119 79 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 NBR2-204ENST00000587322 63 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 AC005014.2-201ENST00000607795 599 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 AF250324.2-201ENST00000608299 610 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 AC090617.10-201ENST00000624308 134 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 MIR3674-201ENST00000636576 68 ntBASIC0.23□□□□□ -2.37
USP42Q9H9J4 SNORD113.3-201ENST00000364630 78 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 Y_RNA.476-201ENST00000384347 108 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 MIR522-201ENST00000385071 87 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 RNU6-177P-201ENST00000411257 104 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms