Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 AC023449.1-201ENST00000454464 154 ntBASIC2.66□□□□□ -1.98
CCDC113Q9H0I3 AC234781.5-201ENST00000508429 271 ntBASIC2.66□□□□□ -1.98
CCDC113Q9H0I3 RNU2-56P-201ENST00000516826 190 ntBASIC2.66□□□□□ -1.98
CCDC113Q9H0I3 AL929325.1-201ENST00000603096 117 ntBASIC2.66□□□□□ -1.98
CCDC113Q9H0I3 MIR6895-201ENST00000613497 78 ntBASIC2.66□□□□□ -1.98
CCDC113Q9H0I3 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC113Q9H0I3 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC113Q9H0I3 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.65□□□□□ -1.98
CCDC113Q9H0I3 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC113Q9H0I3 Y_RNA.7-201ENST00000362352 102 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 RNU6-674P-201ENST00000363831 107 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.203-201ENST00000364106 102 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 RNA5SP126-201ENST00000365092 109 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 RNU6-47P-201ENST00000383866 107 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 RNU4-70P-201ENST00000384579 139 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 SNORD23.1-201ENST00000408212 104 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 RNU2-64P-201ENST00000411315 191 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 AL049830.1-201ENST00000468034 425 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 AC072026.1-201ENST00000605023 201 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 MIR1291-201ENST00000627649 87 ntBASIC2.65□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.270-201ENST00000364693 104 ntBASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 RNA5SP450-201ENST00000411206 102 ntBASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 AC245047.3-201ENST00000429428 127 ntBASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 AC107393.1-201ENST00000512403 346 ntBASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 RN7SKP164-201ENST00000516138 266 ntBASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 AP002004.2-201ENST00000531656 154 ntBASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 MIR4308-201ENST00000580634 81 ntBASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 JPX_2.1-201ENST00000614161 69 ntBASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.64□□□□□ -1.99
CCDC113Q9H0I3 AC068700.1-201ENST00000565862 3754 ntBASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.572-201ENST00000384757 98 ntBASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 RNA5SP109-201ENST00000391010 116 ntBASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 AL358944.1-201ENST00000528537 144 ntBASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 AC067747.1-201ENST00000608026 250 ntBASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 AC098479.1-201ENST00000609225 154 ntBASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 AC046143.2-201ENST00000609789 160 ntBASIC2.63□□□□□ -1.99
CCDC113Q9H0I3 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 RNU6-103P-201ENST00000363686 107 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.238-201ENST00000364441 102 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.571-201ENST00000384753 98 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 MIR520A-201ENST00000384862 85 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 RNU6-918P-201ENST00000391219 106 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 RNA5SP496-201ENST00000391240 109 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 SNORA11.2-201ENST00000408318 127 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 RNU2-2P-201ENST00000410396 191 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 MTND2P29-201ENST00000438595 412 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 RPS12P2-201ENST00000439728 269 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 RNU7-120P-201ENST00000459334 63 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 AC026436.1-201ENST00000510537 270 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 RNU2-19P-201ENST00000517288 84 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 MIR5694-201ENST00000581190 76 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 RNU2-4P-201ENST00000606190 192 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 AL137847.3-201ENST00000611521 109 ntBASIC2.62□□□□□ -1.99
CCDC113Q9H0I3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.233-201ENST00000364407 101 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.265-201ENST00000364677 108 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 RNU6-381P-201ENST00000391259 108 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 MIR1278-201ENST00000408753 81 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 AC245047.4-201ENST00000433189 144 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 AC245047.8-201ENST00000456455 284 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 RNA5SP57-201ENST00000459463 123 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.797-201ENST00000515977 94 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 RNA5SP82-201ENST00000516707 92 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 AC022559.1-201ENST00000520905 205 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 RPL23AP91-201ENST00000569211 455 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 AC022217.4-201ENST00000604389 163 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 AL590808.1-201ENST00000618696 141 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 AC012640.5-201ENST00000623897 319 ntBASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC113Q9H0I3 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 SNORA1B-201ENST00000362535 133 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.229-201ENST00000364347 113 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 RNU6-950P-201ENST00000384651 107 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 MT-TR-201ENST00000387439 65 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 MLLT10P1-201ENST00000418346 262 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 AC055731.1-201ENST00000474387 401 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 RNU6-1007P-201ENST00000516586 107 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.714-201ENST00000517065 90 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 AC091544.4-201ENST00000555268 342 ntBASIC2.6□□□□□ -1.99
CCDC113Q9H0I3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.121-201ENST00000363309 113 ntBASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 Y_RNA.182-201ENST00000363880 111 ntBASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 snoU2_19.4-201ENST00000364329 80 ntBASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 MIR616-201ENST00000385293 97 ntBASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 RNU6-440P-201ENST00000390882 105 ntBASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 AL606517.2-201ENST00000442855 241 ntBASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 HMGN1P7-201ENST00000491722 313 ntBASIC2.59□□□□□ -1.99
CCDC113Q9H0I3 RNA5SP402-201ENST00000517148 110 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 172.5 ms