Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL034345.1-201ENST00000407768 123 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 AC024067.1-201ENST00000426199 223 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 PGBD4P5-201ENST00000445958 426 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 snoU13.9-201ENST00000458927 103 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 U8.19-201ENST00000459095 133 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 AC005908.1-201ENST00000468701 347 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 AC099513.1-201ENST00000490423 301 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 AC136932.1-201ENST00000574771 208 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 MIR4421-201ENST00000578133 69 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 MIR4680-201ENST00000580906 66 ntBASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC3Q9BQI4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 RNU4-13P-201ENST00000364019 141 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 RNA5SP363-201ENST00000365072 115 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.368-201ENST00000365547 113 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 RNU6-937P-201ENST00000384325 106 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 MIR1304-201ENST00000408243 91 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 AC245517.4-201ENST00000448601 281 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 AC091021.1-201ENST00000468051 388 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 HMGN1P10-201ENST00000474557 553 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 RNU6-1143P-201ENST00000516125 104 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 RNU6-897P-201ENST00000517135 105 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 AC015688.6-201ENST00000577737 104 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 AL929325.1-201ENST00000603096 117 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 AC021506.2-201ENST00000612354 169 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 AL513423.1-201ENST00000621695 132 ntBASIC1.45□□□□□ -2.18
CCDC3Q9BQI4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.152-201ENST00000363578 100 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.329-201ENST00000365209 107 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RNU6-203P-201ENST00000384038 104 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RNU6-639P-201ENST00000384074 107 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.456-201ENST00000384232 111 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RNU6-1248P-201ENST00000391096 64 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RNA5SP482-201ENST00000391269 118 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RNU6-985P-201ENST00000410182 104 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RPL30P13-201ENST00000418873 348 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 AL354695.1-201ENST00000427935 228 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RNU6-970P-201ENST00000516312 107 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RNU7-110P-201ENST00000516891 62 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 AC113195.1-201ENST00000579952 141 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 MIR4300-201ENST00000581016 96 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 MIR4422-201ENST00000581938 83 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 RAC1P9-201ENST00000604990 392 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 AL157834.3-201ENST00000615543 103 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 AC100821.1-201ENST00000523153 2479 ntBASIC1.44□□□□□ -2.18
CCDC3Q9BQI4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.136-201ENST00000363444 102 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 RNU6-324P-201ENST00000363957 106 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.216-201ENST00000364205 93 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 RNU6-392P-201ENST00000364926 101 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 RNU6-21P-201ENST00000384710 107 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 SNORA12.1-201ENST00000390873 148 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 RNA5SP511-201ENST00000410487 115 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 AC073349.3-201ENST00000617616 186 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 AC095038.3-201ENST00000634439 195 ntBASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.310-201ENST00000365063 113 ntBASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 RNU6-1323P-201ENST00000384025 107 ntBASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.581-201ENST00000391017 97 ntBASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 RNU6-1096P-201ENST00000517089 102 ntBASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 AC005972.2-201ENST00000604690 348 ntBASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 AC004832.4-201ENST00000608952 331 ntBASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 MIR376A1-201ENST00000616574 68 ntBASIC1.42□□□□□ -2.18
CCDC3Q9BQI4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 SNORA1B-201ENST00000362535 133 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU6-770P-201ENST00000363929 105 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 Y_RNA.214-201ENST00000364201 112 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU6-955P-201ENST00000410497 104 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RPS20P10-201ENST00000451209 253 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU7-34P-201ENST00000459394 64 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 OR9P1P-201ENST00000496431 281 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU6-496P-201ENST00000516145 99 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU6-764P-201ENST00000516396 105 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU6-1046P-201ENST00000516538 107 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU6-63P-201ENST00000516690 95 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU2-56P-201ENST00000516826 190 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU7-116P-201ENST00000516940 62 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 PRR13P7-201ENST00000605538 430 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 ICE2P2-201ENST00000483823 2787 ntBASIC1.41□□□□□ -2.18
CCDC3Q9BQI4 RNU4-90P-201ENST00000362773 141 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 SNORD113-8-201ENST00000363497 74 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 RNU6-450P-201ENST00000364654 107 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 SNORD1A-201ENST00000364968 72 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.326-201ENST00000365176 113 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms