Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 RNA5SP233-201ENST00000459153 113 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 RNU7-141P-201ENST00000459304 62 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 AL049830.1-201ENST00000468034 425 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 Y_RNA.673-201ENST00000516306 88 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 SNORA31.17-201ENST00000516953 127 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 AC024405.2-202ENST00000532731 184 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.9□□□□□ -2.11
NPAS1Q99742 AL162424.1-201ENST00000602325 221 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 AC022217.4-201ENST00000604389 163 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 MIR548AY-201ENST00000617669 107 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 snoU18.1-201ENST00000629629 71 ntBASIC1.9□□□□□ -2.11
NPAS1Q99742 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
NPAS1Q99742 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
NPAS1Q99742 Y_RNA.65-201ENST00000362846 100 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 RNU6-1205P-201ENST00000363625 106 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 Y_RNA.275-201ENST00000364726 110 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 RNA5SP160-201ENST00000364866 120 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 Y_RNA.307-201ENST00000365022 117 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 RNU6-1080P-201ENST00000383982 107 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
NPAS1Q99742 SNORA26.5-201ENST00000391215 123 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 RNU2-14P-201ENST00000411053 191 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 AL135790.2-201ENST00000437701 267 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 AC104332.1-201ENST00000440471 797 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 AL606517.2-201ENST00000442855 241 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 U8.19-201ENST00000459095 133 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 AP002004.2-201ENST00000531656 154 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 MIR4709-201ENST00000577272 72 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 MIR4299-201ENST00000577899 72 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 MIR3945-201ENST00000581853 98 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 MIR3128-201ENST00000581957 66 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.89□□□□□ -2.11
NPAS1Q99742 AC010900.2-201ENST00000604508 210 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 Y_RNA.783-201ENST00000613546 102 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 MIR8054-201ENST00000620877 86 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.89□□□□□ -2.11
NPAS1Q99742 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
NPAS1Q99742 ICE2P2-201ENST00000483823 2787 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
NPAS1Q99742 RNU6-1272P-201ENST00000362776 107 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 SNORA4.2-201ENST00000365313 147 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 Y_RNA.416-201ENST00000384014 113 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 RNU6-1323P-201ENST00000384025 107 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 SNORA72-201ENST00000384339 132 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 RNU6-296P-201ENST00000384608 107 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 MIR676-201ENST00000390702 67 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 SNORA48.3-201ENST00000391081 134 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 SNORA11.2-201ENST00000408318 127 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.88□□□□□ -2.11
NPAS1Q99742 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.88□□□□□ -2.11
NPAS1Q99742 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.88□□□□□ -2.11
NPAS1Q99742 RNU7-115P-201ENST00000516433 55 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 RNA5SP437-201ENST00000517249 129 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 IGKV3-31-201ENST00000523109 329 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 BX284668.6-201ENST00000606899 438 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 MIR6132-201ENST00000622083 109 ntBASIC1.88□□□□□ -2.11
NPAS1Q99742 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.88□□□□□ -2.11
NPAS1Q99742 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
NPAS1Q99742 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.87□□□□□ -2.11
NPAS1Q99742 UBE2WP1-201ENST00000362030 340 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 SNORA1B-201ENST00000362535 133 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 Y_RNA.188-201ENST00000363952 111 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 SNORA63D-201ENST00000364359 132 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 Y_RNA.447-201ENST00000384184 113 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 SNORA70B-201ENST00000384210 135 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 Y_RNA.489-201ENST00000384410 101 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 AL034345.1-201ENST00000407768 123 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 SNORA36B-201ENST00000410438 131 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 MLLT10P1-201ENST00000418346 262 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.87□□□□□ -2.11
NPAS1Q99742 HMGN2P19-201ENST00000425149 265 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 STAG3L5P-204ENST00000443759 179 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 snoU13.27-201ENST00000459278 104 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 RNU6-1271P-201ENST00000517049 105 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 MIR4648-201ENST00000580107 72 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 MIR3935-201ENST00000583472 104 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 AC091178.2-201ENST00000584401 117 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 AC012493.3-201ENST00000604494 112 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 SNORA28-201ENST00000606769 126 ntBASIC1.87□□□□□ -2.11
NPAS1Q99742 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
NPAS1Q99742 RNU6-414P-201ENST00000363705 104 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 RNU6-211P-201ENST00000384047 107 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 Y_RNA.478-201ENST00000384358 107 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
NPAS1Q99742 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.86□□□□□ -2.11
NPAS1Q99742 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.86□□□□□ -2.11
NPAS1Q99742 RPS27P1-201ENST00000450552 247 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 Y_RNA.637-201ENST00000459424 114 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 RNU1-40P-201ENST00000516816 164 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 RNU1-97P-201ENST00000516872 164 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 MIR5692C2-201ENST00000577959 77 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 AL929325.1-201ENST00000603096 117 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 AP003357.1-201ENST00000604497 148 ntBASIC1.86□□□□□ -2.11
NPAS1Q99742 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
NPAS1Q99742 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
NPAS1Q99742 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
NPAS1Q99742 SNORD68-201ENST00000363214 84 ntBASIC1.85□□□□□ -2.11
NPAS1Q99742 Y_RNA.217-201ENST00000364214 105 ntBASIC1.85□□□□□ -2.11
NPAS1Q99742 AL445646.1-201ENST00000431784 216 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms