Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU6-1337P-201ENST00000516525 95 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 RNU2-56P-201ENST00000516826 190 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 Y_RNA.712-201ENST00000517011 92 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 AC079600.2-201ENST00000550076 130 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 AC121758.2-201ENST00000553271 193 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 AP003357.1-201ENST00000604497 148 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 AC245884.12-201ENST00000615364 59 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.65□□□□□ -1.99
CLIP3Q96DZ5 AC062016.1-201ENST00000355719 319 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 SNORA63.4-201ENST00000362763 126 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 SNORD45.3-201ENST00000363836 72 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 RNU6-597P-201ENST00000365620 102 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 SNORA20B-201ENST00000384220 132 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 MIR181A2-201ENST00000384863 110 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 SNORA75.5-201ENST00000391291 81 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 MIR873-201ENST00000401120 77 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 AL138827.1-201ENST00000402666 306 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 CYCSP49-201ENST00000420810 319 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 AL121890.1-201ENST00000435457 205 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 HSPE1P21-201ENST00000438283 308 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 AC016717.1-201ENST00000448918 286 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 SNRPGP8-201ENST00000454064 226 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 RNU1-131P-201ENST00000458943 161 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 YWHAEP4-201ENST00000505390 198 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 PDCD5P2-201ENST00000507570 312 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 ZNF861P-201ENST00000588126 639 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 snoZ196.1-201ENST00000625269 89 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 AC068647.2-201ENST00000637380 353 ntBASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CLIP3Q96DZ5 AL159152.1-201ENST00000635019 2587 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1164P-201ENST00000364428 107 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 Y_RNA.294-201ENST00000364916 102 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 Y_RNA.521-201ENST00000384560 114 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 MIR524-201ENST00000385242 87 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 HMGN2P39-201ENST00000398005 273 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 AL158823.1-201ENST00000418441 478 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 RN7SL297P-201ENST00000483161 293 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 SNORA31.11-201ENST00000516528 139 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 IGLV3-17-201ENST00000519099 244 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 AC127455.1-201ENST00000565496 145 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 MIR4672-201ENST00000583126 81 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 AC120024.3-201ENST00000603167 156 ntBASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.63□□□□□ -1.99
CLIP3Q96DZ5 SNORA27.1-201ENST00000362604 124 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RNU6-859P-201ENST00000362728 107 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 SNORD114-6-201ENST00000364393 72 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RNU1-112P-201ENST00000364401 164 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 Y_RNA.280-201ENST00000364765 112 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RNU6-915P-201ENST00000364943 103 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1323P-201ENST00000384025 107 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 AL512604.1-201ENST00000404812 257 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1064P-201ENST00000410626 104 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RNU6-57P-201ENST00000411348 103 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 AL109933.2-201ENST00000452651 260 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RPL36AP21-201ENST00000490372 323 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RNU6-856P-201ENST00000516959 98 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 MIR3162-201ENST00000581818 82 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 AL021707.8-201ENST00000609428 183 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 AC013412.1-201ENST00000610687 192 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 MIR6129-201ENST00000616087 109 ntBASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.62□□□□□ -1.99
CLIP3Q96DZ5 RNU1-58P-201ENST00000362413 163 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1336P-201ENST00000383886 109 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 RNU6-1144P-201ENST00000384247 104 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 RNU6-476P-201ENST00000384726 107 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 MIR518C-201ENST00000384822 101 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 MIR518A2-201ENST00000384966 87 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 Y_RNA.622-201ENST00000411091 108 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 RN7SKP101-201ENST00000411376 320 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 AC108938.1-201ENST00000451204 136 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 RNU6-221P-201ENST00000459541 99 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 RPS26P55-201ENST00000471178 356 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 RN7SKP179-201ENST00000516126 217 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 RNU7-193P-201ENST00000516723 65 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 AC090049.2-201ENST00000550377 109 ntBASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.61□□□□□ -1.99
CLIP3Q96DZ5 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 MIR449A-201ENST00000362113 91 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 MIR26A1-201ENST00000362205 77 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 RNU6-978P-201ENST00000364371 103 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 RNU6-484P-201ENST00000384016 107 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 MIR9-1-201ENST00000385198 89 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 SNORA40.5-201ENST00000391061 128 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 RNA5SP21-201ENST00000410917 96 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 165.5 ms