Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RPL23AP50-201ENST00000434149 455 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 AL162725.1-201ENST00000435405 301 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.4□□□□□ -2.35
LMX1AQ8TE12 U8.22-201ENST00000459141 133 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 AC026782.1-201ENST00000512952 449 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 RNU4-54P-201ENST00000516428 129 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 SNORA62.5-201ENST00000516634 120 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 SNORA74.3-201ENST00000517108 154 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.4□□□□□ -2.35
LMX1AQ8TE12 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 AC018462.2-201ENST00000605375 395 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 MIR3674-201ENST00000636576 68 ntBASIC0.4□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.157-201ENST00000363638 102 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.258-201ENST00000364613 105 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.374-201ENST00000365606 101 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 RNU6-1013P-201ENST00000384180 107 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 MIR452-201ENST00000385020 85 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 RNA5SP127-201ENST00000411051 133 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 AL354751.2-201ENST00000415471 210 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 MTCYBP10-201ENST00000424905 650 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 DLGAP5P1-201ENST00000430307 464 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 UBE2V1P7-201ENST00000446395 340 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.39□□□□□ -2.35
LMX1AQ8TE12 MTND5P5-201ENST00000503764 376 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 AC114811.1-201ENST00000507207 168 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 RN7SKP164-201ENST00000516138 266 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 RNU1-54P-201ENST00000517181 120 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 RNU2-12P-201ENST00000517216 168 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 AC109810.1-201ENST00000534066 224 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 AC018659.1-201ENST00000551083 169 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 AC025627.3-201ENST00000582078 182 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 MIR6128-201ENST00000615528 109 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 AC007014.2-201ENST00000615581 479 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 AL109933.3-201ENST00000619095 188 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 MIR3662-201ENST00000637030 95 ntBASIC0.39□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.89-201ENST00000363031 102 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.559-201ENST00000384686 107 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 SNORD89-201ENST00000390981 114 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 RNA5SP475-201ENST00000410568 110 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.38□□□□□ -2.35
LMX1AQ8TE12 RNU4-57P-201ENST00000515980 135 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 RNU6-1110P-201ENST00000516462 101 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 RNU6-314P-201ENST00000516574 104 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 RNU6-63P-201ENST00000516690 95 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 AC023442.1-201ENST00000531247 422 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.38□□□□□ -2.35
LMX1AQ8TE12 AL591926.4-201ENST00000616895 298 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 AC244015.1-201ENST00000622301 99 ntBASIC0.38□□□□□ -2.35
LMX1AQ8TE12 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.38□□□□□ -2.35
LMX1AQ8TE12 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.38□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.9-201ENST00000362354 101 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.30-201ENST00000362572 97 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 SNORD115-30-201ENST00000364117 82 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.517-201ENST00000384551 106 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 RNU6-136P-201ENST00000384663 107 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 PIGPP3-201ENST00000425307 415 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 AL392103.1-201ENST00000447000 198 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 ELOCP24-201ENST00000456370 334 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 RNU6-625P-201ENST00000459412 107 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.37□□□□□ -2.35
LMX1AQ8TE12 SNORA40.9-201ENST00000515895 93 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 RNU7-41P-201ENST00000515917 61 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 SNORA25.10-201ENST00000515926 124 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 RNU11-2P-201ENST00000516898 142 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 AC103591.3-201ENST00000608684 209 ntBASIC0.37□□□□□ -2.35
LMX1AQ8TE12 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.37□□□□□ -2.35
LMX1AQ8TE12 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.37□□□□□ -2.35
LMX1AQ8TE12 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
LMX1AQ8TE12 MIR103A2-201ENST00000362154 78 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 RNU4-24P-201ENST00000364565 139 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 RNU6-593P-201ENST00000364716 112 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 RNU6-1310P-201ENST00000384153 107 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.554-201ENST00000384672 102 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 RNU6-700P-201ENST00000391043 107 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 MIR1302-7-201ENST00000408841 72 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 RNU2-70P-201ENST00000410718 179 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 AC074085.1-201ENST00000413598 418 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.36□□□□□ -2.35
LMX1AQ8TE12 RNU6-329P-201ENST00000459618 107 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 RNU6-1337P-201ENST00000516525 95 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 AC036111.3-201ENST00000526389 112 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 AC245505.1-201ENST00000556398 224 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 AC134026.1-201ENST00000623249 2239 ntBASIC0.36□□□□□ -2.35
LMX1AQ8TE12 RNU6-1301P-201ENST00000362724 104 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 RNU6-879P-201ENST00000364328 108 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.251-201ENST00000364551 99 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 RNY1P8-201ENST00000383970 114 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.450-201ENST00000384198 113 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 SNORD116-2-201ENST00000384274 95 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 SNORD116-6-201ENST00000384711 96 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 MIR520C-201ENST00000385005 87 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 MIR522-201ENST00000385071 87 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 MIR136-201ENST00000385207 82 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
LMX1AQ8TE12 MIR548K-201ENST00000408406 116 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 SNORD99-201ENST00000408612 74 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 MIR1197-201ENST00000408818 88 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 Y_RNA.594-201ENST00000410373 140 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 AC009161.1-201ENST00000417306 376 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 234.6 ms