Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL442644.1-201ENST00000454390 3105 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.5-201ENST00000362334 102 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 RNU6-490P-201ENST00000362985 107 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.314-201ENST00000365114 102 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.387-201ENST00000383918 102 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 RNU6-1040P-201ENST00000383974 107 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 RNU6-1310P-201ENST00000384153 107 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 RNU6-1297P-201ENST00000384415 104 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 MIR19B1-201ENST00000384829 87 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 SNORA75.2-201ENST00000391138 150 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 SNORA75.3-201ENST00000391231 150 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 SNRPGP10-201ENST00000432323 225 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 AC002429.1-201ENST00000437672 148 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 SNORD124-201ENST00000459577 104 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 FGF7P4-201ENST00000509595 295 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 RNU6-947P-201ENST00000516264 106 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 RNU6-875P-201ENST00000516488 106 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 RNU6-264P-201ENST00000517134 104 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 MIR4524B-201ENST00000581569 115 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 MIR4762-201ENST00000585261 75 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 UBE2V2P2-201ENST00000587677 504 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 AP000942.3-201ENST00000603702 160 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 PRELID3BP2-201ENST00000605362 201 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 SNORD58B-201ENST00000607313 66 ntBASIC0.82□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.80-201ENST00000362996 102 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 RNU6-833P-201ENST00000363486 107 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 U8.5-201ENST00000364528 136 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.253-201ENST00000364562 112 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.485-201ENST00000384395 102 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.529-201ENST00000384586 119 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.570-201ENST00000384750 101 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 SNORD78.2-201ENST00000391076 69 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 SUMO1P2-201ENST00000452524 304 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 RNU4-77P-201ENST00000516692 156 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 RNU7-4P-201ENST00000516961 62 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 AP003716.2-201ENST00000528260 108 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 AC011604.1-201ENST00000545978 196 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 AC005176.2-201ENST00000596933 147 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 AC120024.3-201ENST00000603167 156 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 MIR6857-201ENST00000613267 93 ntBASIC0.81□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.27-201ENST00000362540 103 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.58-201ENST00000362807 102 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 SNORD68-201ENST00000363214 84 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.154-201ENST00000363624 102 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.259-201ENST00000364619 101 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 RNY3P1-201ENST00000365085 102 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.315-201ENST00000365117 102 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.329-201ENST00000365209 107 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.336-201ENST00000365307 109 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 RNY3-201ENST00000365484 102 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 MIR532-201ENST00000385025 91 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 MIR522-201ENST00000385071 87 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.605-201ENST00000410577 105 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 AC092473.1-201ENST00000441098 221 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 RPS20P10-201ENST00000451209 253 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 SNORD19B-201ENST00000459623 84 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 RNU6-155P-201ENST00000516347 100 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 RNU6-911P-201ENST00000516523 104 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 SNORA70.22-201ENST00000517160 124 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 AC144568.1-201ENST00000520139 137 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 AC006600.1-201ENST00000572529 153 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 FAM106DP-201ENST00000586416 501 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 MIR6715A-201ENST00000615929 79 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 AC112487.2-201ENST00000637950 304 ntBASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
CCDC54Q8NEL0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.310-201ENST00000365063 113 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 MIR562-201ENST00000384894 95 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 AL451046.2-201ENST00000403074 277 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 AL590004.1-201ENST00000405321 300 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 MIR1298-201ENST00000408783 112 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 AL163540.1-201ENST00000485382 386 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 AC005840.1-201ENST00000498412 377 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 MIR4661-201ENST00000582720 75 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 MIR5188-201ENST00000583467 113 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 RBM11P1-201ENST00000604951 799 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 AL391903.3-201ENST00000612158 163 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 AC027279.3-201ENST00000625055 122 ntBASIC0.79□□□□□ -2.28
CCDC54Q8NEL0 RNU6-1175P-201ENST00000365200 107 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.458-201ENST00000384240 102 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 RNY3P14-201ENST00000384309 102 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 MIR146A-201ENST00000385201 99 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 RNU11-5P-201ENST00000391216 129 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 MIR891A-201ENST00000401237 79 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 RNU6-130P-201ENST00000411112 103 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 POLR2J4-204ENST00000418424 324 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 MTCO2P27-201ENST00000420740 428 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 CYCTP-201ENST00000504253 315 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 AC090142.3-201ENST00000519012 385 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 MIR4298-201ENST00000584380 73 ntBASIC0.78□□□□□ -2.28
CCDC54Q8NEL0 Y_RNA.187-201ENST00000363918 113 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms