Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-1160P-201ENST00000384546 104 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.570-201ENST00000384750 101 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 MIR628-201ENST00000385229 95 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RPL21P1-201ENST00000399532 476 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 AL355796.1-201ENST00000406706 323 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 MIR548F4-201ENST00000408515 105 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 MIR1252-201ENST00000408861 65 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-101P-201ENST00000410323 104 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-57P-201ENST00000411348 103 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-625P-201ENST00000459412 107 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 AL133373.1-201ENST00000497098 94 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-408P-201ENST00000515910 100 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-1046P-201ENST00000516538 107 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNU1-142P-201ENST00000516682 145 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNA5SP404-201ENST00000517118 132 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 RNU7-128P-201ENST00000517247 62 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 AC022616.4-201ENST00000522985 181 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 AL121655.1-201ENST00000605811 308 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 AL138825.1-201ENST00000618587 192 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 U6.108-201ENST00000637764 58 ntBASIC1.19□□□□□ -2.22
ZNF540Q8NDQ6 SNORD81.1-201ENST00000363064 77 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 SNORD115-30-201ENST00000364117 82 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.214-201ENST00000364201 112 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-20P-201ENST00000384106 107 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.455-201ENST00000384230 98 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 SNORA25-201ENST00000384384 134 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-417P-201ENST00000384712 107 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 MTCO3P19-201ENST00000415864 321 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 ELOCP20-201ENST00000422460 345 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 RPL39P38-201ENST00000467018 153 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 AL390123.1-201ENST00000603216 237 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 AC124312.5-201ENST00000604451 268 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 MIR8070-201ENST00000616510 88 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 MIR3674-201ENST00000636576 68 ntBASIC1.18□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.124-201ENST00000363339 93 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-626P-201ENST00000363354 107 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 RNU5F-3P-201ENST00000363767 117 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.243-201ENST00000364481 109 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.286-201ENST00000364813 102 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.471-201ENST00000384312 102 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-102P-201ENST00000384485 104 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.551-201ENST00000384661 102 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 MIR606-201ENST00000384851 96 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 RN7SKP200-201ENST00000410564 320 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 SNORD116-28-201ENST00000516123 91 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-397P-201ENST00000516226 104 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-764P-201ENST00000516396 105 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-897P-201ENST00000517135 105 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 CYCSP23-201ENST00000519781 313 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 AC090821.2-201ENST00000523552 176 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 AC023442.1-201ENST00000531247 422 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 MIR4300-201ENST00000581016 96 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 AL360085.1-201ENST00000604713 532 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 BX284668.6-201ENST00000606899 438 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 AL359075.3-201ENST00000613288 217 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 U6.115-201ENST00000636045 103 ntBASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
ZNF540Q8NDQ6 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 SNORA63-201ENST00000363450 132 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 RNU1-124P-201ENST00000363861 145 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 RNU4-50P-201ENST00000364361 141 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.276-201ENST00000364732 109 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.389-201ENST00000383924 113 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-639P-201ENST00000384074 107 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 RNU6-937P-201ENST00000384325 106 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 MTATP8P1-201ENST00000467115 207 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 OR2A41P-201ENST00000473586 105 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 RPS23P4-201ENST00000487908 423 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 Y_RNA.673-201ENST00000516306 88 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 AC131281.1-201ENST00000522984 164 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 AL355297.3-201ENST00000604082 446 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 AC022441.3-201ENST00000605737 136 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 AL022345.2-201ENST00000606307 135 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 AC004467.1-201ENST00000615678 330 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.16□□□□□ -2.22
ZNF540Q8NDQ6 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
ZNF540Q8NDQ6 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 snoU2_19.2-201ENST00000363024 80 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.143-201ENST00000363520 106 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 SNORA63.7-201ENST00000365579 123 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 AC117470.1-201ENST00000381974 330 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.446-201ENST00000384178 104 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 SNORA20B-201ENST00000384220 132 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 SNORD63-201ENST00000384262 68 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.498-201ENST00000384460 102 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 SNORD115-46-201ENST00000390982 71 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 RNU4-30P-201ENST00000410245 143 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 RNU2-54P-201ENST00000410299 190 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 RPL21P38-201ENST00000418090 167 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 MTND2P23-201ENST00000422990 651 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 HSPE1P25-201ENST00000455484 251 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms