Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RNU6-740P-201ENST00000364734 105 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.306-201ENST00000365015 102 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.312-201ENST00000365089 102 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.322-201ENST00000365151 102 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.489-201ENST00000384410 101 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 COX6CP10-201ENST00000416832 224 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 AC233266.1-201ENST00000454518 96 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.650-201ENST00000459002 102 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 RNU7-141P-201ENST00000459304 62 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.777-201ENST00000516982 102 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 AC011604.1-201ENST00000545978 196 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.771-201ENST00000598668 102 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 AC242852.1-201ENST00000612151 96 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 AC244015.1-201ENST00000622301 99 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.789-201ENST00000622480 102 ntBASIC2.58□□□□□ -2
CCDC144BQ3MJ40 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.58□□□□□ -2
CCDC144BQ3MJ40 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.57□□□□□ -2
CCDC144BQ3MJ40 AL596028.1-201ENST00000326971 197 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.54-201ENST00000362766 105 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 U8.7-201ENST00000364940 136 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 SNORA64-201ENST00000384674 134 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 MT-TG-201ENST00000387429 68 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 SNORA26.5-201ENST00000391215 123 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.590-201ENST00000410140 107 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 BTF3P11-201ENST00000426582 477 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.57□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.637-201ENST00000459424 114 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 AC117454.1-201ENST00000491120 168 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 AC108210.2-201ENST00000503681 201 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.57□□□□□ -2
CCDC144BQ3MJ40 RNU6-1023P-201ENST00000516137 106 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.679-201ENST00000516416 91 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 SNORA31.17-201ENST00000516953 127 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 AC024405.2-202ENST00000532731 184 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 AC127455.1-201ENST00000565496 145 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 MIR4713-201ENST00000582691 75 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 AC013791.1-201ENST00000616619 62 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 MIR8054-201ENST00000620877 86 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 snoU18.1-201ENST00000629629 71 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 AP000553.5-201ENST00000641933 54 ntBASIC2.57□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.20-201ENST00000362479 113 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.188-201ENST00000363952 111 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 SNORA20.1-201ENST00000364790 130 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.447-201ENST00000384184 113 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 RNU6-440P-201ENST00000390882 105 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 MTCO2P33-201ENST00000402100 465 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.621-201ENST00000411065 96 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.56□□□□□ -2
CCDC144BQ3MJ40 HSPE1P9-201ENST00000440046 311 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 snoU13.27-201ENST00000459278 104 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 AL049830.1-201ENST00000468034 425 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 RNU6-1291P-201ENST00000516591 104 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 RNA5SP437-201ENST00000517249 129 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 MIR4299-201ENST00000577899 72 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 AL627230.6-201ENST00000611129 280 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 AC080100.1-201ENST00000624239 5356 ntBASIC2.56□□□□□ -2
CCDC144BQ3MJ40 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.55□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.307-201ENST00000365022 117 ntBASIC2.55□□□□□ -2
CCDC144BQ3MJ40 MIR221-201ENST00000385135 110 ntBASIC2.55□□□□□ -2
CCDC144BQ3MJ40 AL034345.1-201ENST00000407768 123 ntBASIC2.55□□□□□ -2
CCDC144BQ3MJ40 RPL23AP54-201ENST00000495129 419 ntBASIC2.55□□□□□ -2
CCDC144BQ3MJ40 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.55□□□□□ -2
CCDC144BQ3MJ40 MIR4709-201ENST00000577272 72 ntBASIC2.55□□□□□ -2
CCDC144BQ3MJ40 MIR5692C2-201ENST00000577959 77 ntBASIC2.55□□□□□ -2
CCDC144BQ3MJ40 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.55□□□□□ -2
CCDC144BQ3MJ40 RNU6-1205P-201ENST00000363625 106 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.277-201ENST00000364754 102 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 SNORA67.3-201ENST00000384366 140 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 RNA5SP482-201ENST00000391269 118 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 SNORA36B-201ENST00000410438 131 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 AL606517.2-201ENST00000442855 241 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.54□□□□□ -2
CCDC144BQ3MJ40 RPS27P21-201ENST00000486977 252 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 AC022254.1-201ENST00000567857 235 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 MIR2681-201ENST00000581814 105 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 MIR3128-201ENST00000581957 66 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 AC006006.1-201ENST00000603082 144 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 AC073349.3-201ENST00000617616 186 ntBASIC2.54□□□□□ -2
CCDC144BQ3MJ40 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC144BQ3MJ40 SNORA1B-201ENST00000362535 133 ntBASIC2.53□□□□□ -2
CCDC144BQ3MJ40 RNU6-1048P-201ENST00000364054 107 ntBASIC2.53□□□□□ -2
CCDC144BQ3MJ40 Y_RNA.265-201ENST00000364677 108 ntBASIC2.53□□□□□ -2
CCDC144BQ3MJ40 RNU6-211P-201ENST00000384047 107 ntBASIC2.53□□□□□ -2
CCDC144BQ3MJ40 RNA5SP338-201ENST00000410495 85 ntBASIC2.53□□□□□ -2
CCDC144BQ3MJ40 RNU2-14P-201ENST00000411053 191 ntBASIC2.53□□□□□ -2
CCDC144BQ3MJ40 AL356379.1-201ENST00000414105 126 ntBASIC2.53□□□□□ -2
CCDC144BQ3MJ40 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.53□□□□□ -2
CCDC144BQ3MJ40 MIR4282-201ENST00000583613 67 ntBASIC2.53□□□□□ -2
CCDC144BQ3MJ40 AC134026.1-201ENST00000623249 2239 ntBASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-674P-201ENST00000363831 107 ntBASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 AL023284.1-201ENST00000403956 276 ntBASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 SNORD2.1-201ENST00000458762 69 ntBASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 MRPS17P9-201ENST00000511924 393 ntBASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-1271P-201ENST00000517049 105 ntBASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 MIR5688-201ENST00000580619 83 ntBASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms