Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RNU6-623P-201ENST00000363143 105 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 SNORD115-30-201ENST00000364117 82 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 RNU6-879P-201ENST00000364328 108 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 Y_RNA.594-201ENST00000410373 140 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 AL354751.2-201ENST00000415471 210 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 AC233266.1-201ENST00000454518 96 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.38□□□□□ -2.35
FOXF1Q12946 RNU6-1110P-201ENST00000516462 101 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 RNU7-43P-201ENST00000516554 64 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 RNU6-307P-201ENST00000516743 106 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 Y_RNA.708-201ENST00000516950 96 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 AC131055.1-201ENST00000584626 316 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 AC242852.1-201ENST00000612151 96 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 AC007014.2-201ENST00000615581 479 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 AC100810.6-201ENST00000638068 285 ntBASIC0.38□□□□□ -2.35
FOXF1Q12946 Y_RNA.269-201ENST00000364685 89 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 Y_RNA.295-201ENST00000364918 102 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 RNU4-12P-201ENST00000365233 139 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 Y_RNA.554-201ENST00000384672 102 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 SNORD89-201ENST00000390981 114 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 MIR1185-1-201ENST00000408598 86 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 MIR1298-201ENST00000408783 112 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 RNU6-1050P-201ENST00000410388 107 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 HMGN2P32-201ENST00000444648 269 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.37□□□□□ -2.35
FOXF1Q12946 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.37□□□□□ -2.35
FOXF1Q12946 AC114811.1-201ENST00000507207 168 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 RNU4-49P-201ENST00000516080 140 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 RN7SKP164-201ENST00000516138 266 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 RNU6-63P-201ENST00000516690 95 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 AC023442.1-201ENST00000531247 422 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 AC018638.8-201ENST00000588755 281 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 AC093913.1-201ENST00000614178 329 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 AC090517.2-201ENST00000614966 680 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 AC244015.1-201ENST00000622301 99 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 MIR5087-201ENST00000635826 76 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 MIR3688-2-201ENST00000636963 87 ntBASIC0.37□□□□□ -2.35
FOXF1Q12946 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
FOXF1Q12946 MIR103A2-201ENST00000362154 78 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 RNU6-1301P-201ENST00000362724 104 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 Y_RNA.339-201ENST00000365325 102 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 Y_RNA.482-201ENST00000384377 111 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 MIR136-201ENST00000385207 82 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 RNA5SP511-201ENST00000410487 115 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.36□□□□□ -2.35
FOXF1Q12946 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.36□□□□□ -2.35
FOXF1Q12946 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.36□□□□□ -2.35
FOXF1Q12946 RPL23AP50-201ENST00000434149 455 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.36□□□□□ -2.35
FOXF1Q12946 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.36□□□□□ -2.35
FOXF1Q12946 RNU6-496P-201ENST00000516145 99 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 RNU4-54P-201ENST00000516428 129 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.36□□□□□ -2.35
FOXF1Q12946 AC018659.1-201ENST00000551083 169 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 MIR4711-201ENST00000578274 70 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 AL136317.1-201ENST00000612653 226 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 AL591926.4-201ENST00000616895 298 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 MIR6515-201ENST00000619843 57 ntBASIC0.36□□□□□ -2.35
FOXF1Q12946 SNORD18A-201ENST00000363753 72 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 Y_RNA.355-201ENST00000365462 98 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 Y_RNA.370-201ENST00000365589 108 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 SNORD14.1-201ENST00000365609 90 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 Y_RNA.508-201ENST00000384502 114 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 MIR522-201ENST00000385071 87 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 MIR936-201ENST00000401264 98 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 SNORD12B-201ENST00000410433 91 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 RNU2-61P-201ENST00000411069 191 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 MRPS18CP6-201ENST00000423587 223 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 MTND1P4-201ENST00000435196 415 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 AL392103.1-201ENST00000447000 198 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 RNU7-87P-201ENST00000459343 62 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 RPL17P19-201ENST00000489069 552 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 RNU4-57P-201ENST00000515980 135 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 Y_RNA.670-201ENST00000516255 105 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 Y_RNA.682-201ENST00000516457 100 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 RNU6-1337P-201ENST00000516525 95 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 AC109810.1-201ENST00000534066 224 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 RBM11P1-201ENST00000604951 799 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 AC080013.6-201ENST00000606185 215 ntBASIC0.35□□□□□ -2.35
FOXF1Q12946 Y_RNA.2-201ENST00000362330 96 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 SNORA25.3-201ENST00000363205 127 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 SNORD68-201ENST00000363214 84 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 Y_RNA.253-201ENST00000364562 112 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
FOXF1Q12946 RNU6-1067P-201ENST00000384752 107 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 MIR520C-201ENST00000385005 87 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 SNORD111-201ENST00000408139 94 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 RNU2-54P-201ENST00000410299 190 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 RNA5SP193-201ENST00000410353 107 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 MTND3P8-201ENST00000412909 339 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 PIGPP3-201ENST00000425307 415 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 AC244023.1-201ENST00000426884 112 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 RPS3AP52-201ENST00000435639 297 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.34□□□□□ -2.36
FOXF1Q12946 snoU13.18-201ENST00000459483 104 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 AC105313.1-201ENST00000509121 353 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 Y_RNA.673-201ENST00000516306 88 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 MIR4764-201ENST00000580680 88 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 AC006380.1-201ENST00000603598 186 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 AC242498.1-201ENST00000604134 111 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms