Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SNORA31.4-201ENST00000516049 129 ntBASIC0.99□□□□□ -2.25
LIM2P55344 SNORD116-28-201ENST00000516123 91 ntBASIC0.99□□□□□ -2.25
LIM2P55344 Y_RNA.676-201ENST00000516393 96 ntBASIC0.99□□□□□ -2.25
LIM2P55344 SNORA40.14-201ENST00000516543 86 ntBASIC0.99□□□□□ -2.25
LIM2P55344 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.99□□□□□ -2.25
LIM2P55344 AC006600.1-201ENST00000572529 153 ntBASIC0.99□□□□□ -2.25
LIM2P55344 MIR548S-201ENST00000581352 82 ntBASIC0.99□□□□□ -2.25
LIM2P55344 AC084781.2-201ENST00000615568 161 ntBASIC0.99□□□□□ -2.25
LIM2P55344 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
LIM2P55344 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.98□□□□□ -2.25
LIM2P55344 AC005592.1-201ENST00000566527 1640 ntBASIC0.98□□□□□ -2.25
LIM2P55344 RNA5SP327-201ENST00000362494 101 ntBASIC0.98□□□□□ -2.25
LIM2P55344 RNU4-41P-201ENST00000364426 143 ntBASIC0.98□□□□□ -2.25
LIM2P55344 Y_RNA.570-201ENST00000384750 101 ntBASIC0.98□□□□□ -2.25
LIM2P55344 SNORD41-201ENST00000386967 70 ntBASIC0.98□□□□□ -2.25
LIM2P55344 RNA5SP511-201ENST00000410487 115 ntBASIC0.98□□□□□ -2.25
LIM2P55344 RPS4XP11-201ENST00000446897 772 ntBASIC0.98□□□□□ -2.25
LIM2P55344 RPS23P4-201ENST00000487908 423 ntBASIC0.98□□□□□ -2.25
LIM2P55344 HMGN1P7-201ENST00000491722 313 ntBASIC0.98□□□□□ -2.25
LIM2P55344 RNU7-12P-201ENST00000516030 62 ntBASIC0.98□□□□□ -2.25
LIM2P55344 RNU6-475P-201ENST00000516073 104 ntBASIC0.98□□□□□ -2.25
LIM2P55344 RNU6-436P-201ENST00000516171 114 ntBASIC0.98□□□□□ -2.25
LIM2P55344 MIR4778-201ENST00000577635 80 ntBASIC0.98□□□□□ -2.25
LIM2P55344 AL121655.1-201ENST00000605811 308 ntBASIC0.98□□□□□ -2.25
LIM2P55344 Y_RNA.315-201ENST00000365117 102 ntBASIC0.97□□□□□ -2.25
LIM2P55344 RNU6-939P-201ENST00000384634 107 ntBASIC0.97□□□□□ -2.25
LIM2P55344 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
LIM2P55344 SNORD12-201ENST00000391002 90 ntBASIC0.97□□□□□ -2.25
LIM2P55344 MIR891A-201ENST00000401237 79 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AF228730.4-201ENST00000421457 183 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.97□□□□□ -2.25
LIM2P55344 Z98949.2-201ENST00000440996 144 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AC005042.3-201ENST00000453230 174 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AC233266.1-201ENST00000454518 96 ntBASIC0.97□□□□□ -2.25
LIM2P55344 RNU6-917P-201ENST00000516294 104 ntBASIC0.97□□□□□ -2.25
LIM2P55344 RNU6-155P-201ENST00000516347 100 ntBASIC0.97□□□□□ -2.25
LIM2P55344 RNU6-922P-201ENST00000516753 99 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.97□□□□□ -2.25
LIM2P55344 AC120024.3-201ENST00000603167 156 ntBASIC0.97□□□□□ -2.25
LIM2P55344 Y_RNA.772-201ENST00000606692 102 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AC242852.1-201ENST00000612151 96 ntBASIC0.97□□□□□ -2.25
LIM2P55344 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AC244015.1-201ENST00000622301 99 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AC106754.2-201ENST00000623006 233 ntBASIC0.97□□□□□ -2.25
LIM2P55344 AC027335.2-201ENST00000624030 375 ntBASIC0.97□□□□□ -2.25
LIM2P55344 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
LIM2P55344 Y_RNA.4-201ENST00000362333 112 ntBASIC0.96□□□□□ -2.26
LIM2P55344 RNU1-124P-201ENST00000363861 145 ntBASIC0.96□□□□□ -2.26
LIM2P55344 RNY3P11-201ENST00000364153 102 ntBASIC0.96□□□□□ -2.26
LIM2P55344 SNORA25-201ENST00000384384 134 ntBASIC0.96□□□□□ -2.26
LIM2P55344 MCFD2P1-201ENST00000417812 300 ntBASIC0.96□□□□□ -2.26
LIM2P55344 RNU6-63P-201ENST00000516690 95 ntBASIC0.96□□□□□ -2.26
LIM2P55344 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.96□□□□□ -2.26
LIM2P55344 MIR4781-201ENST00000585250 76 ntBASIC0.96□□□□□ -2.26
LIM2P55344 AC005972.2-201ENST00000604690 348 ntBASIC0.96□□□□□ -2.26
LIM2P55344 AC004832.4-201ENST00000608952 331 ntBASIC0.96□□□□□ -2.26
LIM2P55344 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
LIM2P55344 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC0.96□□□□□ -2.26
LIM2P55344 AL606534.2-204ENST00000635008 178 ntBASIC0.96□□□□□ -2.26
LIM2P55344 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.95□□□□□ -2.26
LIM2P55344 RNU4-38P-201ENST00000364472 129 ntBASIC0.95□□□□□ -2.26
LIM2P55344 SNORD63-201ENST00000384262 68 ntBASIC0.95□□□□□ -2.26
LIM2P55344 SNORA72-201ENST00000384339 132 ntBASIC0.95□□□□□ -2.26
LIM2P55344 Y_RNA.529-201ENST00000384586 119 ntBASIC0.95□□□□□ -2.26
LIM2P55344 MIR452-201ENST00000385020 85 ntBASIC0.95□□□□□ -2.26
LIM2P55344 MIR15B-201ENST00000385045 98 ntBASIC0.95□□□□□ -2.26
LIM2P55344 AC024067.1-201ENST00000426199 223 ntBASIC0.95□□□□□ -2.26
LIM2P55344 RPL39P39-201ENST00000455840 151 ntBASIC0.95□□□□□ -2.26
LIM2P55344 AL133373.1-201ENST00000497098 94 ntBASIC0.95□□□□□ -2.26
LIM2P55344 MTND3P22-201ENST00000510932 243 ntBASIC0.95□□□□□ -2.26
LIM2P55344 AC011604.1-201ENST00000545978 196 ntBASIC0.95□□□□□ -2.26
LIM2P55344 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.95□□□□□ -2.26
LIM2P55344 RPS29P30-201ENST00000600975 111 ntBASIC0.95□□□□□ -2.26
LIM2P55344 AL117336.2-201ENST00000602435 335 ntBASIC0.95□□□□□ -2.26
LIM2P55344 AL022345.2-201ENST00000606307 135 ntBASIC0.95□□□□□ -2.26
LIM2P55344 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.95□□□□□ -2.26
LIM2P55344 AC068647.2-201ENST00000637380 353 ntBASIC0.95□□□□□ -2.26
LIM2P55344 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.95□□□□□ -2.26
LIM2P55344 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
LIM2P55344 RNU4-79P-201ENST00000362764 141 ntBASIC0.94□□□□□ -2.26
LIM2P55344 RNU6-324P-201ENST00000363957 106 ntBASIC0.94□□□□□ -2.26
LIM2P55344 RNU6-1175P-201ENST00000365200 107 ntBASIC0.94□□□□□ -2.26
LIM2P55344 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.94□□□□□ -2.26
LIM2P55344 RNU7-40P-201ENST00000516397 64 ntBASIC0.94□□□□□ -2.26
LIM2P55344 RNU7-116P-201ENST00000516940 62 ntBASIC0.94□□□□□ -2.26
LIM2P55344 SNORA70.22-201ENST00000517160 124 ntBASIC0.94□□□□□ -2.26
LIM2P55344 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.94□□□□□ -2.26
LIM2P55344 AP001094.1-201ENST00000579805 193 ntBASIC0.94□□□□□ -2.26
LIM2P55344 AC092447.9-201ENST00000603395 144 ntBASIC0.94□□□□□ -2.26
LIM2P55344 LARP7P1-201ENST00000605576 316 ntBASIC0.94□□□□□ -2.26
LIM2P55344 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
LIM2P55344 AC011476.5-201ENST00000615594 130 ntBASIC0.94□□□□□ -2.26
LIM2P55344 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
LIM2P55344 AL391516.1-201ENST00000554380 2449 ntBASIC0.93□□□□□ -2.26
LIM2P55344 Y_RNA.5-201ENST00000362334 102 ntBASIC0.93□□□□□ -2.26
LIM2P55344 Y_RNA.112-201ENST00000363250 102 ntBASIC0.93□□□□□ -2.26
LIM2P55344 Y_RNA.356-201ENST00000365475 113 ntBASIC0.93□□□□□ -2.26
LIM2P55344 RNU6-1323P-201ENST00000384025 107 ntBASIC0.93□□□□□ -2.26
LIM2P55344 Y_RNA.456-201ENST00000384232 111 ntBASIC0.93□□□□□ -2.26
LIM2P55344 SNORD116-13-201ENST00000384408 92 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 188.9 ms