Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AL162725.1-201ENST00000435405 301 ntBASIC1.42□□□□□ -2.18
LHX1P48742 AC027119.1-201ENST00000440877 241 ntBASIC1.42□□□□□ -2.18
LHX1P48742 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.42□□□□□ -2.18
LHX1P48742 RNU1-123P-201ENST00000458950 160 ntBASIC1.42□□□□□ -2.18
LHX1P48742 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.42□□□□□ -2.18
LHX1P48742 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.42□□□□□ -2.18
LHX1P48742 RNU6-988P-201ENST00000519081 107 ntBASIC1.42□□□□□ -2.18
LHX1P48742 AL353770.2-201ENST00000620024 78 ntBASIC1.42□□□□□ -2.18
LHX1P48742 AC134503.1-201ENST00000633048 54 ntBASIC1.42□□□□□ -2.18
LHX1P48742 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.42□□□□□ -2.18
LHX1P48742 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX1P48742 WWP1P1-201ENST00000466609 2769 ntBASIC1.41□□□□□ -2.18
LHX1P48742 RNU6-937P-201ENST00000384325 106 ntBASIC1.41□□□□□ -2.18
LHX1P48742 SNORD116-13-201ENST00000384408 92 ntBASIC1.41□□□□□ -2.18
LHX1P48742 RNU6-1065P-201ENST00000384513 106 ntBASIC1.41□□□□□ -2.18
LHX1P48742 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.41□□□□□ -2.18
LHX1P48742 RNA5SP482-201ENST00000391269 118 ntBASIC1.41□□□□□ -2.18
LHX1P48742 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX1P48742 MTCO2P12-201ENST00000427426 682 ntBASIC1.41□□□□□ -2.18
LHX1P48742 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.41□□□□□ -2.18
LHX1P48742 AL049830.1-201ENST00000468034 425 ntBASIC1.41□□□□□ -2.18
LHX1P48742 AL358944.1-201ENST00000528537 144 ntBASIC1.41□□□□□ -2.18
LHX1P48742 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX1P48742 AC124312.5-201ENST00000604451 268 ntBASIC1.41□□□□□ -2.18
LHX1P48742 AL157834.3-201ENST00000615543 103 ntBASIC1.41□□□□□ -2.18
LHX1P48742 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.41□□□□□ -2.18
LHX1P48742 SNORD3E-202ENST00000627253 216 ntBASIC1.41□□□□□ -2.18
LHX1P48742 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
LHX1P48742 SNORD63-201ENST00000384262 68 ntBASIC1.4□□□□□ -2.19
LHX1P48742 Y_RNA.551-201ENST00000384661 102 ntBASIC1.4□□□□□ -2.19
LHX1P48742 RNU6-21P-201ENST00000384710 107 ntBASIC1.4□□□□□ -2.19
LHX1P48742 MIR660-201ENST00000385235 97 ntBASIC1.4□□□□□ -2.19
LHX1P48742 MIR758-201ENST00000390227 88 ntBASIC1.4□□□□□ -2.19
LHX1P48742 RNU6-710P-201ENST00000410424 105 ntBASIC1.4□□□□□ -2.19
LHX1P48742 RNU6-902P-201ENST00000517212 91 ntBASIC1.4□□□□□ -2.19
LHX1P48742 AC022616.4-201ENST00000522985 181 ntBASIC1.4□□□□□ -2.19
LHX1P48742 AP001485.1-201ENST00000604799 199 ntBASIC1.4□□□□□ -2.19
LHX1P48742 AL365434.2-201ENST00000607979 234 ntBASIC1.4□□□□□ -2.19
LHX1P48742 Y_RNA.138-201ENST00000363462 102 ntBASIC1.39□□□□□ -2.19
LHX1P48742 SNORA63.7-201ENST00000365579 123 ntBASIC1.39□□□□□ -2.19
LHX1P48742 Y_RNA.645-201ENST00000391229 102 ntBASIC1.39□□□□□ -2.19
LHX1P48742 MIR548P-201ENST00000408336 84 ntBASIC1.39□□□□□ -2.19
LHX1P48742 RNU4-30P-201ENST00000410245 143 ntBASIC1.39□□□□□ -2.19
LHX1P48742 RNU6-101P-201ENST00000410323 104 ntBASIC1.39□□□□□ -2.19
LHX1P48742 Y_RNA.621-201ENST00000411065 96 ntBASIC1.39□□□□□ -2.19
LHX1P48742 RNU6-130P-201ENST00000411112 103 ntBASIC1.39□□□□□ -2.19
LHX1P48742 SNX2P2-201ENST00000424553 323 ntBASIC1.39□□□□□ -2.19
LHX1P48742 RPS27P16-201ENST00000425758 201 ntBASIC1.39□□□□□ -2.19
LHX1P48742 RPS4XP11-201ENST00000446897 772 ntBASIC1.39□□□□□ -2.19
LHX1P48742 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.39□□□□□ -2.19
LHX1P48742 OR9P1P-201ENST00000496431 281 ntBASIC1.39□□□□□ -2.19
LHX1P48742 RNA5SP61-201ENST00000516453 100 ntBASIC1.39□□□□□ -2.19
LHX1P48742 MIR3660-201ENST00000584845 100 ntBASIC1.39□□□□□ -2.19
LHX1P48742 PRR13P7-201ENST00000605538 430 ntBASIC1.39□□□□□ -2.19
LHX1P48742 AC004832.4-201ENST00000608952 331 ntBASIC1.39□□□□□ -2.19
LHX1P48742 PART1_1.1-201ENST00000611761 217 ntBASIC1.39□□□□□ -2.19
LHX1P48742 AL121890.5-201ENST00000620848 304 ntBASIC1.39□□□□□ -2.19
LHX1P48742 Y_RNA.172-201ENST00000363765 102 ntBASIC1.38□□□□□ -2.19
LHX1P48742 Y_RNA.327-201ENST00000365201 102 ntBASIC1.38□□□□□ -2.19
LHX1P48742 Y_RNA.389-201ENST00000383924 113 ntBASIC1.38□□□□□ -2.19
LHX1P48742 SNORA40.6-201ENST00000391153 128 ntBASIC1.38□□□□□ -2.19
LHX1P48742 RNU6-855P-201ENST00000410395 104 ntBASIC1.38□□□□□ -2.19
LHX1P48742 RNU6-321P-201ENST00000410912 106 ntBASIC1.38□□□□□ -2.19
LHX1P48742 AC024067.1-201ENST00000426199 223 ntBASIC1.38□□□□□ -2.19
LHX1P48742 CALM2P4-201ENST00000430810 426 ntBASIC1.38□□□□□ -2.19
LHX1P48742 TRMT112P2-201ENST00000512910 132 ntBASIC1.38□□□□□ -2.19
LHX1P48742 RNA5SP168-201ENST00000516642 112 ntBASIC1.38□□□□□ -2.19
LHX1P48742 Y_RNA.715-201ENST00000517082 110 ntBASIC1.38□□□□□ -2.19
LHX1P48742 Y_RNA.721-201ENST00000517207 102 ntBASIC1.38□□□□□ -2.19
LHX1P48742 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.38□□□□□ -2.19
LHX1P48742 MIR4778-201ENST00000577635 80 ntBASIC1.38□□□□□ -2.19
LHX1P48742 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.38□□□□□ -2.19
LHX1P48742 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.38□□□□□ -2.19
LHX1P48742 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.38□□□□□ -2.19
LHX1P48742 SNORD81.1-201ENST00000363064 77 ntBASIC1.37□□□□□ -2.19
LHX1P48742 RNU6-450P-201ENST00000364654 107 ntBASIC1.37□□□□□ -2.19
LHX1P48742 SNORA22B-201ENST00000383876 138 ntBASIC1.37□□□□□ -2.19
LHX1P48742 RNU6-424P-201ENST00000384367 105 ntBASIC1.37□□□□□ -2.19
LHX1P48742 RNU6-823P-201ENST00000391042 103 ntBASIC1.37□□□□□ -2.19
LHX1P48742 U8.16-201ENST00000391279 133 ntBASIC1.37□□□□□ -2.19
LHX1P48742 RPL30P13-201ENST00000418873 348 ntBASIC1.37□□□□□ -2.19
LHX1P48742 AC004223.1-201ENST00000479840 271 ntBASIC1.37□□□□□ -2.19
LHX1P48742 AC005840.1-201ENST00000498412 377 ntBASIC1.37□□□□□ -2.19
LHX1P48742 RNU6-397P-201ENST00000516226 104 ntBASIC1.37□□□□□ -2.19
LHX1P48742 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.37□□□□□ -2.19
LHX1P48742 AC011604.1-201ENST00000545978 196 ntBASIC1.37□□□□□ -2.19
LHX1P48742 DEFB117-201ENST00000602356 141 ntBASIC1.37□□□□□ -2.19
LHX1P48742 AC104695.3-201ENST00000604052 296 ntBASIC1.37□□□□□ -2.19
LHX1P48742 AC005972.2-201ENST00000604690 348 ntBASIC1.37□□□□□ -2.19
LHX1P48742 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.37□□□□□ -2.19
LHX1P48742 RNU4-41P-201ENST00000364426 143 ntBASIC1.36□□□□□ -2.19
LHX1P48742 RNU4-76P-201ENST00000364509 141 ntBASIC1.36□□□□□ -2.19
LHX1P48742 RNU6-1080P-201ENST00000383982 107 ntBASIC1.36□□□□□ -2.19
LHX1P48742 AL135790.2-201ENST00000437701 267 ntBASIC1.36□□□□□ -2.19
LHX1P48742 RPS20P10-201ENST00000451209 253 ntBASIC1.36□□□□□ -2.19
LHX1P48742 RNU6-1046P-201ENST00000516538 107 ntBASIC1.36□□□□□ -2.19
LHX1P48742 Y_RNA.711-201ENST00000516993 102 ntBASIC1.36□□□□□ -2.19
LHX1P48742 MIR3171-201ENST00000584270 74 ntBASIC1.36□□□□□ -2.19
LHX1P48742 SNORD113-5-201ENST00000607261 78 ntBASIC1.36□□□□□ -2.19
LHX1P48742 AL078604.3-201ENST00000615580 211 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 181.5 ms