Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR320A-201ENST00000385302 82 ntBASIC1.25□□□□□ -2.21
CDX1P47902 RNU6-308P-201ENST00000390957 107 ntBASIC1.25□□□□□ -2.21
CDX1P47902 MIR1302-11-201ENST00000408051 138 ntBASIC1.25□□□□□ -2.21
CDX1P47902 MIR1302-9-201ENST00000408365 138 ntBASIC1.25□□□□□ -2.21
CDX1P47902 MIR1302-10-201ENST00000408734 138 ntBASIC1.25□□□□□ -2.21
CDX1P47902 RNU6-855P-201ENST00000410395 104 ntBASIC1.25□□□□□ -2.21
CDX1P47902 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.25□□□□□ -2.21
CDX1P47902 SNORA25.10-201ENST00000515926 124 ntBASIC1.25□□□□□ -2.21
CDX1P47902 RNU6-322P-201ENST00000516010 103 ntBASIC1.25□□□□□ -2.21
CDX1P47902 RNU6-475P-201ENST00000516073 104 ntBASIC1.25□□□□□ -2.21
CDX1P47902 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.25□□□□□ -2.21
CDX1P47902 AC022616.4-201ENST00000522985 181 ntBASIC1.25□□□□□ -2.21
CDX1P47902 MIR4423-201ENST00000580922 80 ntBASIC1.25□□□□□ -2.21
CDX1P47902 MIR1302-2-201ENST00000607096 138 ntBASIC1.25□□□□□ -2.21
CDX1P47902 AL050343.2-201ENST00000607338 280 ntBASIC1.25□□□□□ -2.21
CDX1P47902 AC004832.4-201ENST00000608952 331 ntBASIC1.25□□□□□ -2.21
CDX1P47902 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.25□□□□□ -2.21
CDX1P47902 AC090574.1-201ENST00000623186 233 ntBASIC1.25□□□□□ -2.21
CDX1P47902 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
CDX1P47902 AP000648.3-201ENST00000623539 4507 ntBASIC1.24□□□□□ -2.21
CDX1P47902 Y_RNA.140-201ENST00000363474 103 ntBASIC1.24□□□□□ -2.21
CDX1P47902 RNU1-42P-201ENST00000364033 160 ntBASIC1.24□□□□□ -2.21
CDX1P47902 Y_RNA.509-201ENST00000384506 99 ntBASIC1.24□□□□□ -2.21
CDX1P47902 MIR517C-201ENST00000385103 95 ntBASIC1.24□□□□□ -2.21
CDX1P47902 RN7SKP101-201ENST00000411376 320 ntBASIC1.24□□□□□ -2.21
CDX1P47902 DYNLT3P2-201ENST00000442517 295 ntBASIC1.24□□□□□ -2.21
CDX1P47902 Y_RNA.638-201ENST00000459374 113 ntBASIC1.24□□□□□ -2.21
CDX1P47902 RNU6-1116P-201ENST00000517269 99 ntBASIC1.24□□□□□ -2.21
CDX1P47902 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
CDX1P47902 C8orf59P2-201ENST00000603441 271 ntBASIC1.24□□□□□ -2.21
CDX1P47902 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.24□□□□□ -2.21
CDX1P47902 MIRLET7C-201ENST00000362160 84 ntBASIC1.23□□□□□ -2.21
CDX1P47902 Y_RNA.341-201ENST00000365341 102 ntBASIC1.23□□□□□ -2.21
CDX1P47902 SNORA2.2-201ENST00000365473 135 ntBASIC1.23□□□□□ -2.21
CDX1P47902 SNORD42.2-201ENST00000365570 69 ntBASIC1.23□□□□□ -2.21
CDX1P47902 Y_RNA.460-201ENST00000384255 102 ntBASIC1.23□□□□□ -2.21
CDX1P47902 SNORD63-201ENST00000384262 68 ntBASIC1.23□□□□□ -2.21
CDX1P47902 MIR150-201ENST00000385048 84 ntBASIC1.23□□□□□ -2.21
CDX1P47902 MIR891A-201ENST00000401237 79 ntBASIC1.23□□□□□ -2.21
CDX1P47902 AL451046.2-201ENST00000403074 277 ntBASIC1.23□□□□□ -2.21
CDX1P47902 RNU4-30P-201ENST00000410245 143 ntBASIC1.23□□□□□ -2.21
CDX1P47902 MLLT10P1-201ENST00000418346 262 ntBASIC1.23□□□□□ -2.21
CDX1P47902 AC108667.1-201ENST00000428618 249 ntBASIC1.23□□□□□ -2.21
CDX1P47902 AL603825.1-201ENST00000438481 80 ntBASIC1.23□□□□□ -2.21
CDX1P47902 MTND4P19-201ENST00000446659 478 ntBASIC1.23□□□□□ -2.21
CDX1P47902 RPS20P10-201ENST00000451209 253 ntBASIC1.23□□□□□ -2.21
CDX1P47902 RNU6-947P-201ENST00000516264 106 ntBASIC1.23□□□□□ -2.21
CDX1P47902 AC090049.2-201ENST00000550377 109 ntBASIC1.23□□□□□ -2.21
CDX1P47902 AC008269.2-201ENST00000561915 1105 ntBASIC1.23□□□□□ -2.21
CDX1P47902 GHRLOS.1-201ENST00000610995 70 ntBASIC1.23□□□□□ -2.21
CDX1P47902 AC068647.2-201ENST00000637380 353 ntBASIC1.23□□□□□ -2.21
CDX1P47902 Y_RNA.551-201ENST00000384661 102 ntBASIC1.22□□□□□ -2.21
CDX1P47902 PIGPP3-201ENST00000425307 415 ntBASIC1.22□□□□□ -2.21
CDX1P47902 AC104332.1-201ENST00000440471 797 ntBASIC1.22□□□□□ -2.21
CDX1P47902 Y_RNA.639-201ENST00000458981 102 ntBASIC1.22□□□□□ -2.21
CDX1P47902 AC023790.1-201ENST00000482174 347 ntBASIC1.22□□□□□ -2.21
CDX1P47902 AC019288.1-201ENST00000557918 224 ntBASIC1.22□□□□□ -2.21
CDX1P47902 DEFB117-201ENST00000602356 141 ntBASIC1.22□□□□□ -2.21
CDX1P47902 AC124312.5-201ENST00000604451 268 ntBASIC1.22□□□□□ -2.21
CDX1P47902 BX248123.2-201ENST00000606318 124 ntBASIC1.22□□□□□ -2.21
CDX1P47902 AL591926.4-201ENST00000616895 298 ntBASIC1.22□□□□□ -2.21
CDX1P47902 AL160413.1-201ENST00000622780 310 ntBASIC1.22□□□□□ -2.21
CDX1P47902 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.22□□□□□ -2.21
CDX1P47902 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
CDX1P47902 Y_RNA.31-201ENST00000362574 102 ntBASIC1.21□□□□□ -2.22
CDX1P47902 RNU6-60P-201ENST00000364792 103 ntBASIC1.21□□□□□ -2.22
CDX1P47902 SNORA72-201ENST00000384339 132 ntBASIC1.21□□□□□ -2.22
CDX1P47902 MIR653-201ENST00000385279 96 ntBASIC1.21□□□□□ -2.22
CDX1P47902 SNORA67.6-201ENST00000391093 99 ntBASIC1.21□□□□□ -2.22
CDX1P47902 SNORA17.3-201ENST00000391159 129 ntBASIC1.21□□□□□ -2.22
CDX1P47902 CYCTP-201ENST00000504253 315 ntBASIC1.21□□□□□ -2.22
CDX1P47902 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.21□□□□□ -2.22
CDX1P47902 AC120024.3-201ENST00000603167 156 ntBASIC1.21□□□□□ -2.22
CDX1P47902 AL512598.1-201ENST00000610158 273 ntBASIC1.21□□□□□ -2.22
CDX1P47902 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CDX1P47902 MIR378A-201ENST00000362177 66 ntBASIC1.2□□□□□ -2.22
CDX1P47902 RNA5SP327-201ENST00000362494 101 ntBASIC1.2□□□□□ -2.22
CDX1P47902 RNU6-1084P-201ENST00000362498 107 ntBASIC1.2□□□□□ -2.22
CDX1P47902 SNORD81.1-201ENST00000363064 77 ntBASIC1.2□□□□□ -2.22
CDX1P47902 RNU6-833P-201ENST00000363486 107 ntBASIC1.2□□□□□ -2.22
CDX1P47902 SNORA25.8-201ENST00000364831 128 ntBASIC1.2□□□□□ -2.22
CDX1P47902 Y_RNA.456-201ENST00000384232 111 ntBASIC1.2□□□□□ -2.22
CDX1P47902 U8.19-201ENST00000459095 133 ntBASIC1.2□□□□□ -2.22
CDX1P47902 AC114811.1-201ENST00000507207 168 ntBASIC1.2□□□□□ -2.22
CDX1P47902 SEPT14P8-201ENST00000508026 178 ntBASIC1.2□□□□□ -2.22
CDX1P47902 RNU6-917P-201ENST00000516294 104 ntBASIC1.2□□□□□ -2.22
CDX1P47902 SNORA31.24-201ENST00000517232 57 ntBASIC1.2□□□□□ -2.22
CDX1P47902 RNU6-988P-201ENST00000519081 107 ntBASIC1.2□□□□□ -2.22
CDX1P47902 POLR3GP1-201ENST00000594073 261 ntBASIC1.2□□□□□ -2.22
CDX1P47902 AC027279.3-201ENST00000625055 122 ntBASIC1.2□□□□□ -2.22
CDX1P47902 Y_RNA.61-201ENST00000362835 102 ntBASIC1.19□□□□□ -2.22
CDX1P47902 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.19□□□□□ -2.22
CDX1P47902 RNU6-101P-201ENST00000410323 104 ntBASIC1.19□□□□□ -2.22
CDX1P47902 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.19□□□□□ -2.22
CDX1P47902 Y_RNA.631-201ENST00000459607 101 ntBASIC1.19□□□□□ -2.22
CDX1P47902 RNU7-116P-201ENST00000516940 62 ntBASIC1.19□□□□□ -2.22
CDX1P47902 MIR3145-201ENST00000580727 82 ntBASIC1.19□□□□□ -2.22
CDX1P47902 MIR4303-201ENST00000581299 66 ntBASIC1.19□□□□□ -2.22
CDX1P47902 FAM106DP-201ENST00000586416 501 ntBASIC1.19□□□□□ -2.22
CDX1P47902 SNORD113-5-201ENST00000607261 78 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 213.2 ms