Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
TNFRSF4P43489 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
TNFRSF4P43489 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.32□□□□□ -2.2
TNFRSF4P43489 Y_RNA.118-201ENST00000363300 101 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 Y_RNA.143-201ENST00000363520 106 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 Y_RNA.202-201ENST00000364083 110 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 SNORD115-30-201ENST00000364117 82 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 Y_RNA.331-201ENST00000365267 102 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 AC117470.1-201ENST00000381974 330 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 Y_RNA.446-201ENST00000384178 104 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 RNU6-937P-201ENST00000384325 106 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 RNU6-376P-201ENST00000384731 106 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 AL031003.1-201ENST00000404229 172 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.32□□□□□ -2.2
TNFRSF4P43489 RPS27P16-201ENST00000425758 201 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 AC005534.2-201ENST00000431047 433 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 AC004223.1-201ENST00000479840 271 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 Y_RNA.721-201ENST00000517207 102 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.32□□□□□ -2.2
TNFRSF4P43489 MIR4452-201ENST00000583004 71 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 AC104695.3-201ENST00000604052 296 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 PART1_1.1-201ENST00000611761 217 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.32□□□□□ -2.2
TNFRSF4P43489 MIR8054-201ENST00000620877 86 ntBASIC1.32□□□□□ -2.2
TNFRSF4P43489 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNU1-22P-201ENST00000363334 158 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 Y_RNA.243-201ENST00000364481 109 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNA5SP259-201ENST00000365541 109 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 SNORA63.7-201ENST00000365579 123 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 Y_RNA.527-201ENST00000384573 102 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 Y_RNA.551-201ENST00000384661 102 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNU6-21P-201ENST00000384710 107 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 Y_RNA.570-201ENST00000384750 101 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNU6-1031P-201ENST00000384773 107 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNU6-823P-201ENST00000391042 103 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNU11-5P-201ENST00000391216 129 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNU5A-5P-201ENST00000411054 116 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 SNX2P2-201ENST00000424553 323 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 AL135790.2-201ENST00000437701 267 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 AC005042.3-201ENST00000453230 174 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 AC099513.1-201ENST00000490423 301 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 SNORA70.12-201ENST00000516084 153 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNU6-1278P-201ENST00000516130 107 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 SNORA31.10-201ENST00000516482 106 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 Y_RNA.715-201ENST00000517082 110 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RNU7-128P-201ENST00000517247 62 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 RPL21P9-201ENST00000556149 474 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.31□□□□□ -2.2
TNFRSF4P43489 AC011373.1-201ENST00000607270 237 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 AC021506.2-201ENST00000612354 169 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 AL078604.3-201ENST00000615580 211 ntBASIC1.31□□□□□ -2.2
TNFRSF4P43489 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.31□□□□□ -2.2
TNFRSF4P43489 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.3□□□□□ -2.2
TNFRSF4P43489 Y_RNA.158-201ENST00000363651 101 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RNU6-1227P-201ENST00000383981 107 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RNU6-505P-201ENST00000384427 107 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RNU4-30P-201ENST00000410245 143 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RN7SKP51-201ENST00000410781 304 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RNU6-130P-201ENST00000411112 103 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 AL390729.2-201ENST00000416137 156 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 MTCYBP6-201ENST00000441810 138 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RNU6-966P-201ENST00000516479 104 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RNU6-1046P-201ENST00000516538 107 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RNU6-63P-201ENST00000516690 95 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RAC1P9-201ENST00000604990 392 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 AC022441.3-201ENST00000605737 136 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 AC005828.6-201ENST00000606610 232 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 MIR376A1-201ENST00000616574 68 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
TNFRSF4P43489 AL161722.3-201ENST00000605789 2983 ntBASIC1.3□□□□□ -2.2
TNFRSF4P43489 RNU4-76P-201ENST00000364509 141 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 SNORA33.2-201ENST00000365413 134 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.29□□□□□ -2.2
TNFRSF4P43489 RNU6-639P-201ENST00000384074 107 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 Y_RNA.462-201ENST00000384268 102 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 RNU6-136P-201ENST00000384663 107 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 MIR758-201ENST00000390227 88 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 RNU6-440P-201ENST00000390882 105 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 AL034345.1-201ENST00000407768 123 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.29□□□□□ -2.2
TNFRSF4P43489 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.29□□□□□ -2.2
TNFRSF4P43489 RPS29P23-201ENST00000458635 123 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 snoU13.18-201ENST00000459483 104 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.29□□□□□ -2.2
TNFRSF4P43489 SNORA40.15-201ENST00000516884 107 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 AP003072.1-201ENST00000531740 145 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 MIR4680-201ENST00000580906 66 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 AL365434.2-201ENST00000607979 234 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 AC127459.3-201ENST00000624328 466 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 MIR6079-201ENST00000635807 62 ntBASIC1.29□□□□□ -2.2
TNFRSF4P43489 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.29□□□□□ -2.2
TNFRSF4P43489 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.29□□□□□ -2.2
TNFRSF4P43489 AC018630.2-201ENST00000534866 2403 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 RNU6-694P-201ENST00000364071 147 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 Y_RNA.267-201ENST00000364679 109 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 Y_RNA.329-201ENST00000365209 107 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 Y_RNA.455-201ENST00000384230 98 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 MIR1252-201ENST00000408861 65 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 RNU6-1199P-201ENST00000411249 104 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms