Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC010297.1-201ENST00000623948 149 ntBASIC2.53□□□□□ -2
MSX2P35548 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.53□□□□□ -2
MSX2P35548 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
MSX2P35548 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.52□□□□□ -2.01
MSX2P35548 Y_RNA.91-201ENST00000363042 107 ntBASIC2.52□□□□□ -2.01
MSX2P35548 RNU6-1209P-201ENST00000363655 107 ntBASIC2.52□□□□□ -2.01
MSX2P35548 Y_RNA.294-201ENST00000364916 102 ntBASIC2.52□□□□□ -2.01
MSX2P35548 Y_RNA.510-201ENST00000384511 114 ntBASIC2.52□□□□□ -2.01
MSX2P35548 MIR562-201ENST00000384894 95 ntBASIC2.52□□□□□ -2.01
MSX2P35548 AC060773.1-201ENST00000421698 310 ntBASIC2.52□□□□□ -2.01
MSX2P35548 SUMO1P4-201ENST00000429430 302 ntBASIC2.52□□□□□ -2.01
MSX2P35548 AC011604.1-201ENST00000545978 196 ntBASIC2.52□□□□□ -2.01
MSX2P35548 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.52□□□□□ -2.01
MSX2P35548 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
MSX2P35548 RNA5SP393-201ENST00000363423 117 ntBASIC2.51□□□□□ -2.01
MSX2P35548 SNORA38-201ENST00000363946 132 ntBASIC2.51□□□□□ -2.01
MSX2P35548 SNORA25.7-201ENST00000364375 127 ntBASIC2.51□□□□□ -2.01
MSX2P35548 Y_RNA.280-201ENST00000364765 112 ntBASIC2.51□□□□□ -2.01
MSX2P35548 Y_RNA.634-201ENST00000364811 113 ntBASIC2.51□□□□□ -2.01
MSX2P35548 Y_RNA.712-201ENST00000517011 92 ntBASIC2.51□□□□□ -2.01
MSX2P35548 MIR2681-201ENST00000581814 105 ntBASIC2.51□□□□□ -2.01
MSX2P35548 AL137847.3-201ENST00000611521 109 ntBASIC2.51□□□□□ -2.01
MSX2P35548 U4atac.1-201ENST00000618345 95 ntBASIC2.51□□□□□ -2.01
MSX2P35548 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
MSX2P35548 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
MSX2P35548 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.5□□□□□ -2.01
MSX2P35548 RNU1-112P-201ENST00000364401 164 ntBASIC2.5□□□□□ -2.01
MSX2P35548 RNU6-1080P-201ENST00000383982 107 ntBASIC2.5□□□□□ -2.01
MSX2P35548 AL158823.1-201ENST00000418441 478 ntBASIC2.5□□□□□ -2.01
MSX2P35548 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.5□□□□□ -2.01
MSX2P35548 SNORA4.4-201ENST00000515921 135 ntBASIC2.5□□□□□ -2.01
MSX2P35548 RN7SKP179-201ENST00000516126 217 ntBASIC2.5□□□□□ -2.01
MSX2P35548 AC090049.2-201ENST00000550377 109 ntBASIC2.5□□□□□ -2.01
MSX2P35548 MIR5194-201ENST00000582634 120 ntBASIC2.5□□□□□ -2.01
MSX2P35548 AL137790.1-201ENST00000634283 177 ntBASIC2.5□□□□□ -2.01
MSX2P35548 FO624990.1-201ENST00000636373 85 ntBASIC2.5□□□□□ -2.01
MSX2P35548 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.49□□□□□ -2.01
MSX2P35548 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
MSX2P35548 MIR6073-201ENST00000352083 89 ntBASIC2.49□□□□□ -2.01
MSX2P35548 U8.1-201ENST00000362843 134 ntBASIC2.49□□□□□ -2.01
MSX2P35548 SNORA80A-201ENST00000363922 136 ntBASIC2.49□□□□□ -2.01
MSX2P35548 RNU1-96P-201ENST00000364163 162 ntBASIC2.49□□□□□ -2.01
MSX2P35548 MIR561-201ENST00000385216 97 ntBASIC2.49□□□□□ -2.01
MSX2P35548 RNU2-70P-201ENST00000410718 179 ntBASIC2.49□□□□□ -2.01
MSX2P35548 HMGN2P34-201ENST00000437647 269 ntBASIC2.49□□□□□ -2.01
MSX2P35548 RNU6-1096P-201ENST00000517089 102 ntBASIC2.49□□□□□ -2.01
MSX2P35548 RNU7-128P-201ENST00000517247 62 ntBASIC2.49□□□□□ -2.01
MSX2P35548 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.49□□□□□ -2.01
MSX2P35548 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
MSX2P35548 AC096644.4-201ENST00000563417 2912 ntBASIC2.48□□□□□ -2.01
MSX2P35548 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.48□□□□□ -2.01
MSX2P35548 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
MSX2P35548 Y_RNA.120-201ENST00000363304 110 ntBASIC2.48□□□□□ -2.01
MSX2P35548 SNORA5B-201ENST00000363786 132 ntBASIC2.48□□□□□ -2.01
MSX2P35548 RNU6-1138P-201ENST00000365359 106 ntBASIC2.48□□□□□ -2.01
MSX2P35548 RNU6-1056P-201ENST00000383996 107 ntBASIC2.48□□□□□ -2.01
MSX2P35548 RNU6-851P-201ENST00000384565 107 ntBASIC2.48□□□□□ -2.01
MSX2P35548 RNU6-429P-201ENST00000384582 108 ntBASIC2.48□□□□□ -2.01
MSX2P35548 AC018868.1-201ENST00000491307 315 ntBASIC2.48□□□□□ -2.01
MSX2P35548 RNU7-149P-201ENST00000516739 59 ntBASIC2.48□□□□□ -2.01
MSX2P35548 RNU2-60P-201ENST00000517290 128 ntBASIC2.48□□□□□ -2.01
MSX2P35548 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.48□□□□□ -2.01
MSX2P35548 AC073413.2-201ENST00000604332 360 ntBASIC2.48□□□□□ -2.01
MSX2P35548 MIR7106-201ENST00000612419 65 ntBASIC2.48□□□□□ -2.01
MSX2P35548 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.48□□□□□ -2.01
MSX2P35548 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.48□□□□□ -2.01
MSX2P35548 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.48□□□□□ -2.01
MSX2P35548 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
MSX2P35548 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.47□□□□□ -2.01
MSX2P35548 RNU6-235P-201ENST00000362644 107 ntBASIC2.47□□□□□ -2.01
MSX2P35548 snoU2-30.2-201ENST00000362805 70 ntBASIC2.47□□□□□ -2.01
MSX2P35548 RNU6-153P-201ENST00000364422 104 ntBASIC2.47□□□□□ -2.01
MSX2P35548 MIR1253-201ENST00000408273 105 ntBASIC2.47□□□□□ -2.01
MSX2P35548 RNU2-52P-201ENST00000410680 190 ntBASIC2.47□□□□□ -2.01
MSX2P35548 AC023449.1-201ENST00000454464 154 ntBASIC2.47□□□□□ -2.01
MSX2P35548 RPS29P21-201ENST00000496272 170 ntBASIC2.47□□□□□ -2.01
MSX2P35548 AC011406.1-201ENST00000512440 370 ntBASIC2.47□□□□□ -2.01
MSX2P35548 AC091178.2-201ENST00000584401 117 ntBASIC2.47□□□□□ -2.01
MSX2P35548 AC131055.1-201ENST00000584626 316 ntBASIC2.47□□□□□ -2.01
MSX2P35548 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.47□□□□□ -2.01
MSX2P35548 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.46□□□□□ -2.02
MSX2P35548 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.46□□□□□ -2.02
MSX2P35548 Y_RNA.66-201ENST00000362862 102 ntBASIC2.46□□□□□ -2.02
MSX2P35548 RNU1-138P-201ENST00000384093 164 ntBASIC2.46□□□□□ -2.02
MSX2P35548 Y_RNA.486-201ENST00000384398 107 ntBASIC2.46□□□□□ -2.02
MSX2P35548 MIR520G-201ENST00000385064 90 ntBASIC2.46□□□□□ -2.02
MSX2P35548 AL138827.1-201ENST00000402666 306 ntBASIC2.46□□□□□ -2.02
MSX2P35548 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.46□□□□□ -2.02
MSX2P35548 RNU6-1064P-201ENST00000410626 104 ntBASIC2.46□□□□□ -2.02
MSX2P35548 NDUFA4P2-201ENST00000489989 244 ntBASIC2.46□□□□□ -2.02
MSX2P35548 OR9P1P-201ENST00000496431 281 ntBASIC2.46□□□□□ -2.02
MSX2P35548 RNU6-772P-201ENST00000516042 105 ntBASIC2.46□□□□□ -2.02
MSX2P35548 Y_RNA.692-201ENST00000516627 105 ntBASIC2.46□□□□□ -2.02
MSX2P35548 SNORA31.15-201ENST00000516771 132 ntBASIC2.46□□□□□ -2.02
MSX2P35548 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.46□□□□□ -2.02
MSX2P35548 Y_RNA.757-201ENST00000578934 114 ntBASIC2.46□□□□□ -2.02
MSX2P35548 MIR3121-201ENST00000579680 77 ntBASIC2.46□□□□□ -2.02
MSX2P35548 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.46□□□□□ -2.02
MSX2P35548 Pinc.1-201ENST00000616452 154 ntBASIC2.46□□□□□ -2.02
MSX2P35548 MIR3914-2-201ENST00000637339 95 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms