Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RNU6-1114P-201ENST00000516022 107 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 RNU6-415P-201ENST00000516252 97 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 RNU4-77P-201ENST00000516692 156 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 AC093027.1-201ENST00000546698 429 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 MIR5696-201ENST00000578474 85 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 MIR548AX-201ENST00000580117 73 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 Y_RNA.804-201ENST00000615262 101 ntBASIC0.22□□□□□ -2.37
SHOX2O60902 Y_RNA.65-201ENST00000362846 100 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 U8.5-201ENST00000364528 136 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 SNORD114-3-201ENST00000364969 75 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 RNU6-117P-201ENST00000365415 107 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 Y_RNA.413-201ENST00000384007 102 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 Y_RNA.495-201ENST00000384435 112 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 RNU6-95P-201ENST00000384697 107 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 MIR224-201ENST00000384889 81 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 MIR517A-201ENST00000385001 87 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 MIR1298-201ENST00000408783 112 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 RNU6-648P-201ENST00000410190 107 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.21□□□□□ -2.38
SHOX2O60902 Y_RNA.754-201ENST00000476024 102 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 AC114811.1-201ENST00000507207 168 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.21□□□□□ -2.38
SHOX2O60902 AC023442.1-201ENST00000531247 422 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 LRRC34P1-201ENST00000542742 915 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 MIR4764-201ENST00000580680 88 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 Y_RNA.790-201ENST00000614282 102 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 Y_RNA.782-201ENST00000614695 102 ntBASIC0.21□□□□□ -2.38
SHOX2O60902 MIR1-1-201ENST00000362147 71 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 SNORD114-7-201ENST00000362520 77 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 SNORD68-201ENST00000363214 84 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 RNU6-1327P-201ENST00000365302 105 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 RNU4-45P-201ENST00000365469 141 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 RNY1P8-201ENST00000383970 114 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 RNU6-1064P-201ENST00000410626 104 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.2□□□□□ -2.38
SHOX2O60902 ERLEC1P1-201ENST00000433806 578 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 AC083904.1-201ENST00000487828 231 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 Y_RNA.695-201ENST00000516715 107 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.2□□□□□ -2.38
SHOX2O60902 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.2□□□□□ -2.38
SHOX2O60902 MIR4645-201ENST00000583158 77 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 AC092954.2-201ENST00000609103 430 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 uc_338.6-201ENST00000613544 171 ntBASIC0.2□□□□□ -2.38
SHOX2O60902 AC117470.1-201ENST00000381974 330 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 SNORA75-201ENST00000384158 137 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 RNU6-281P-201ENST00000384212 103 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 Y_RNA.490-201ENST00000384413 102 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 Y_RNA.514-201ENST00000384528 112 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 RNA5SP451-201ENST00000410588 110 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.19□□□□□ -2.38
SHOX2O60902 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.19□□□□□ -2.38
SHOX2O60902 MTND1P4-201ENST00000435196 415 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 UQCRBP2-201ENST00000447827 297 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 MTND1P11-201ENST00000456661 876 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 Y_RNA.659-201ENST00000515994 113 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 RNU6-835P-201ENST00000516974 104 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.19□□□□□ -2.38
SHOX2O60902 AC093023.1-201ENST00000547375 507 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 MIR4300-201ENST00000581016 96 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 MIR4762-201ENST00000585261 75 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 AC104695.3-201ENST00000604052 296 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 AC124303.1-201ENST00000605703 360 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 RNU6-89P-201ENST00000606519 100 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 AC019193.3-201ENST00000609144 554 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 AC073114.1-201ENST00000612027 490 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 MIR198-201ENST00000637333 62 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 AC100810.6-201ENST00000638068 285 ntBASIC0.19□□□□□ -2.38
SHOX2O60902 AC092447.3-201ENST00000426027 686 ntBASIC0.18□□□□□ -2.38
SHOX2O60902 USP9YP16-201ENST00000430287 407 ntBASIC0.18□□□□□ -2.38
SHOX2O60902 USP9YP23-201ENST00000455085 407 ntBASIC0.18□□□□□ -2.38
SHOX2O60902 RNU6-956P-201ENST00000458868 103 ntBASIC0.18□□□□□ -2.38
SHOX2O60902 AC074133.1-201ENST00000515696 183 ntBASIC0.18□□□□□ -2.38
SHOX2O60902 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.18□□□□□ -2.38
SHOX2O60902 AL158211.1-201ENST00000566763 763 ntBASIC0.18□□□□□ -2.38
SHOX2O60902 AC090617.3-201ENST00000573670 475 ntBASIC0.18□□□□□ -2.38
SHOX2O60902 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.18□□□□□ -2.38
SHOX2O60902 MIR410-201ENST00000362222 80 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 RNU6-349P-201ENST00000362402 107 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 RNU4-32P-201ENST00000363404 141 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 Y_RNA.582-201ENST00000391023 95 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 MTND3P23-201ENST00000431980 347 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 MTATP6P13-201ENST00000438531 667 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.17□□□□□ -2.38
SHOX2O60902 AL392103.1-201ENST00000447000 198 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 snoU13.21-201ENST00000459368 105 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.17□□□□□ -2.38
SHOX2O60902 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.17□□□□□ -2.38
SHOX2O60902 AC005828.6-201ENST00000606610 232 ntBASIC0.17□□□□□ -2.38
SHOX2O60902 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.17□□□□□ -2.38
SHOX2O60902 Y_RNA.370-201ENST00000365589 108 ntBASIC0.16□□□□□ -2.38
SHOX2O60902 MIR573-201ENST00000384964 99 ntBASIC0.16□□□□□ -2.38
SHOX2O60902 MIR516B2-201ENST00000385190 85 ntBASIC0.16□□□□□ -2.38
SHOX2O60902 Y_RNA.583-201ENST00000391033 113 ntBASIC0.16□□□□□ -2.38
SHOX2O60902 RNU6-1304P-201ENST00000411374 106 ntBASIC0.16□□□□□ -2.38
SHOX2O60902 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.16□□□□□ -2.38
SHOX2O60902 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.16□□□□□ -2.38
SHOX2O60902 AC108740.1-201ENST00000498629 225 ntBASIC0.16□□□□□ -2.38
SHOX2O60902 Y_RNA.706-201ENST00000516933 99 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms