Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AF250324.2-201ENST00000608299 610 ntBASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 Y_RNA.42-201ENST00000362660 108 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 Y_RNA.49-201ENST00000362714 112 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 RNU6-511P-201ENST00000363496 107 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 RNU6-609P-201ENST00000365459 107 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 MIR588-201ENST00000384900 83 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 MIR320B2-201ENST00000408479 138 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 SNRPGP10-201ENST00000432323 225 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 SEPT14P24-201ENST00000447236 180 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 AC091959.1-201ENST00000495857 238 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 AC011458.1-201ENST00000604034 617 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 AC012409.4-201ENST00000612923 249 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 MIR8066-201ENST00000617280 78 ntBASIC-1.71□□□□□ -2.68
CCDC88BA6NC98 RNU6-1199P-201ENST00000411249 104 ntBASIC-1.72□□□□□ -2.68
CCDC88BA6NC98 AC108729.2-201ENST00000476543 840 ntBASIC-1.72□□□□□ -2.68
CCDC88BA6NC98 RNU6-344P-201ENST00000516635 111 ntBASIC-1.72□□□□□ -2.68
CCDC88BA6NC98 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-1.72□□□□□ -2.68
CCDC88BA6NC98 AC073539.2-201ENST00000597113 165 ntBASIC-1.72□□□□□ -2.68
CCDC88BA6NC98 MIR4791-201ENST00000607666 84 ntBASIC-1.72□□□□□ -2.68
CCDC88BA6NC98 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-1.72□□□□□ -2.68
CCDC88BA6NC98 AC006435.5-201ENST00000624486 112 ntBASIC-1.72□□□□□ -2.68
CCDC88BA6NC98 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 SNORD87-201ENST00000364849 89 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 SNORD38B-201ENST00000384690 67 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 HLA-S-202ENST00000425174 53 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 RPL7P42-201ENST00000481005 679 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 AC010598.1-201ENST00000510378 103 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 AC023158.2-201ENST00000614876 543 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 AC008873.1-201ENST00000625051 138 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 MTND5P18-201ENST00000445624 1801 ntBASIC-1.73□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.74□□□□□ -2.69
CCDC88BA6NC98 RNU6-535P-201ENST00000384722 107 ntBASIC-1.74□□□□□ -2.69
CCDC88BA6NC98 EEF1A1P40-201ENST00000412883 573 ntBASIC-1.74□□□□□ -2.69
CCDC88BA6NC98 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-1.74□□□□□ -2.69
CCDC88BA6NC98 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-1.74□□□□□ -2.69
CCDC88BA6NC98 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC-1.74□□□□□ -2.69
CCDC88BA6NC98 RNA5SP33-201ENST00000516687 98 ntBASIC-1.74□□□□□ -2.69
CCDC88BA6NC98 RNU6-323P-201ENST00000521915 107 ntBASIC-1.74□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.13-201ENST00000362403 112 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 RNU2-39P-201ENST00000410604 198 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 RNA5SP494-201ENST00000410653 129 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 RNU5A-5P-201ENST00000411054 116 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.621-201ENST00000411065 96 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 USP9YP16-201ENST00000430287 407 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 AL359672.1-201ENST00000442302 409 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 MTCO1P27-201ENST00000448269 226 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 MIR3179-1-201ENST00000578940 84 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 MIR3179-2-201ENST00000579107 84 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 MIR3179-3-201ENST00000579566 84 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 AC004223.4-201ENST00000612426 332 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 MIR3179-4-201ENST00000617599 84 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 RNU6-403P-201ENST00000363163 104 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.536-201ENST00000384621 113 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 SNORD64-201ENST00000386683 67 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 ERLEC1P1-201ENST00000433806 578 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 MTCO3P38-201ENST00000468910 766 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 MIR5708-201ENST00000579723 85 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 MIR7844-201ENST00000616161 122 ntBASIC-1.75□□□□□ -2.69
CCDC88BA6NC98 RNU6-1175P-201ENST00000365200 107 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.368-201ENST00000365547 113 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 MIR517B-201ENST00000385102 67 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 MTND4P3-201ENST00000417829 541 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 AL031274.1-201ENST00000450334 232 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 AC117522.1-201ENST00000509821 380 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 SNORA25.13-201ENST00000516395 103 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 SNORD11B-201ENST00000607707 90 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 AC073869.9-201ENST00000641610 120 ntBASIC-1.76□□□□□ -2.69
CCDC88BA6NC98 RNU6-1115P-201ENST00000362490 106 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 RNY4P27-201ENST00000363341 96 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.293-201ENST00000364908 93 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 MIR518B-201ENST00000385127 83 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AC021146.9-201ENST00000512503 156 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 RNA5SP20-201ENST00000515976 84 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 RNA5SP180-201ENST00000516181 101 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 MIR4762-201ENST00000585261 75 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AC005776.1-201ENST00000603164 290 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AP000942.4-201ENST00000604811 241 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AL450270.1-201ENST00000606160 391 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AC091965.4-201ENST00000607691 587 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AC013437.2-201ENST00000639587 677 ntBASIC-1.77□□□□□ -2.69
CCDC88BA6NC98 AC073343.1-201ENST00000328239 651 ntBASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 RNU6-407P-201ENST00000365280 104 ntBASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 RNU6-827P-201ENST00000365553 106 ntBASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 MTATP6P14-201ENST00000455189 673 ntBASIC-1.78□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 192.3 ms