Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 MIR6079-201ENST00000635807 62 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 RNU4-13P-201ENST00000364019 141 ntBASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 Y_RNA.222-201ENST00000364264 102 ntBASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-117P-201ENST00000365415 107 ntBASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-950P-201ENST00000384651 107 ntBASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 SNORA26.9-201ENST00000391322 122 ntBASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 AC245047.3-201ENST00000429428 127 ntBASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 MIR219B-201ENST00000637023 88 ntBASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC9Q9Y3X0 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 AC016717.2-201ENST00000609089 5141 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 snoU2_19.2-201ENST00000363024 80 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 MIR221-201ENST00000385135 110 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 U8.13-201ENST00000390842 128 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 COX6CP10-201ENST00000416832 224 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 ATP6V0E1P3-201ENST00000420036 246 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 CYCSP49-201ENST00000420810 319 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 HSPE1P9-201ENST00000440046 311 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 MTND4LP30-201ENST00000454092 297 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 MIR5092-201ENST00000583139 88 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 U6.104-201ENST00000637979 90 ntBASIC3.04□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-379P-201ENST00000363813 104 ntBASIC3.03□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-136P-201ENST00000384663 107 ntBASIC3.03□□□□□ -1.92
CCDC9Q9Y3X0 MIR215-201ENST00000384858 110 ntBASIC3.03□□□□□ -1.92
CCDC9Q9Y3X0 MIR520G-201ENST00000385064 90 ntBASIC3.03□□□□□ -1.92
CCDC9Q9Y3X0 HMGN2P19-201ENST00000425149 265 ntBASIC3.03□□□□□ -1.92
CCDC9Q9Y3X0 MRPS17P9-201ENST00000511924 393 ntBASIC3.03□□□□□ -1.92
CCDC9Q9Y3X0 AC022254.1-201ENST00000567857 235 ntBASIC3.03□□□□□ -1.92
CCDC9Q9Y3X0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC9Q9Y3X0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC9Q9Y3X0 Z82195.2-201ENST00000612348 18351 ntBASIC3.02□□□□□ -1.93
CCDC9Q9Y3X0 RNU4-80P-201ENST00000363200 141 ntBASIC3.02□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-514P-201ENST00000384208 107 ntBASIC3.02□□□□□ -1.93
CCDC9Q9Y3X0 AL603908.1-201ENST00000406098 201 ntBASIC3.02□□□□□ -1.93
CCDC9Q9Y3X0 AC091021.1-201ENST00000468051 388 ntBASIC3.02□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-570P-201ENST00000517051 105 ntBASIC3.02□□□□□ -1.93
CCDC9Q9Y3X0 AC022217.4-201ENST00000604389 163 ntBASIC3.02□□□□□ -1.93
CCDC9Q9Y3X0 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.341-201ENST00000365341 102 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.541-201ENST00000384640 113 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 MIR676-201ENST00000390702 67 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 AC108667.1-201ENST00000428618 249 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 AC245517.4-201ENST00000448601 281 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 snoU13.27-201ENST00000459278 104 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.668-201ENST00000516233 93 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 MIR5007-201ENST00000583098 95 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 AC005357.1-201ENST00000588399 301 ntBASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC9Q9Y3X0 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.84-201ENST00000363011 104 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.257-201ENST00000364596 102 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.267-201ENST00000364679 109 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.355-201ENST00000365462 98 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 SNORD116-13-201ENST00000384408 92 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.489-201ENST00000384410 101 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 RNU4-70P-201ENST00000384579 139 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC3□□□□□ -1.93
CCDC9Q9Y3X0 RNA5SP511-201ENST00000410487 115 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 FTH1P12-201ENST00000432137 551 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 AL606517.2-201ENST00000442855 241 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 RPS27P1-201ENST00000450552 247 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 RNU7-34P-201ENST00000459394 64 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 RNA5SP445-201ENST00000515889 115 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 RNU2-31P-201ENST00000516954 155 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-388P-201ENST00000517012 105 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-389P-201ENST00000517048 105 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 MIR4709-201ENST00000577272 72 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 AC062037.2-201ENST00000610137 73 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 MIR6845-201ENST00000613182 61 ntBASIC3□□□□□ -1.93
CCDC9Q9Y3X0 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC9Q9Y3X0 SNORA25.1-201ENST00000362326 128 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.136-201ENST00000363444 102 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.307-201ENST00000365022 117 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.456-201ENST00000384232 111 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 AL162725.1-201ENST00000435405 301 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 MIR514B-201ENST00000516774 80 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-341P-201ENST00000516973 96 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-1096P-201ENST00000517089 102 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 AC015720.1-201ENST00000565251 277 ntBASIC2.99□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-414P-201ENST00000363705 104 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.368-201ENST00000365547 113 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.418-201ENST00000384029 102 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 Y_RNA.512-201ENST00000384518 102 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-360P-201ENST00000390944 104 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 RPS20P10-201ENST00000451209 253 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 TRBVB-201ENST00000477100 408 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 RNU2-56P-201ENST00000516826 190 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 AC004832.4-201ENST00000608952 331 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 MIR8054-201ENST00000620877 86 ntBASIC2.98□□□□□ -1.93
CCDC9Q9Y3X0 RNU6-661P-201ENST00000362409 107 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms