Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 BTF3P11-201ENST00000426582 477 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.637-201ENST00000459424 114 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 SNORD53-201ENST00000579969 78 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 AC009779.6-201ENST00000603972 165 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 MIR6840-201ENST00000611937 71 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 RNA5SP432-201ENST00000362480 116 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-862P-201ENST00000362804 105 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-200P-201ENST00000364743 107 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.292-201ENST00000364904 97 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 RNA5SP126-201ENST00000365092 109 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-376P-201ENST00000384731 106 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 RNA5SP323-201ENST00000391094 133 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 MIR1283-2-201ENST00000408621 87 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-1186P-201ENST00000410429 97 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 RNU2-14P-201ENST00000411053 191 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 AL139156.1-201ENST00000412785 841 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 AL162725.1-201ENST00000435405 301 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 AL135790.2-201ENST00000437701 267 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 HSPE1P21-201ENST00000438283 308 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 AP005660.1-201ENST00000522972 293 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 MIR4529-201ENST00000578110 78 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 AC078899.2-201ENST00000595282 212 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 AC004832.4-201ENST00000608952 331 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 MIR6873-201ENST00000622788 63 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 AC012640.5-201ENST00000623897 319 ntBASIC2.4□□□□□ -2.03
LIMCH1Q9UPQ0 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.76-201ENST00000362931 109 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 RNU4-13P-201ENST00000364019 141 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-144P-201ENST00000383951 107 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-211P-201ENST00000384047 107 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 MIR562-201ENST00000384894 95 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 RNA5SP467-201ENST00000391274 118 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AL023284.1-201ENST00000403956 276 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AL355497.1-201ENST00000406262 551 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 RNU2-64P-201ENST00000411315 191 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AL356320.1-201ENST00000429616 163 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 RNU7-94P-201ENST00000459576 63 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AC013791.1-201ENST00000616619 62 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AC068647.2-201ENST00000637380 353 ntBASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.200-201ENST00000364018 102 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA3A-201ENST00000364113 130 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA6-201ENST00000384033 151 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 SNORD116-13-201ENST00000384408 92 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 MIR520G-201ENST00000385064 90 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA26.5-201ENST00000391215 123 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 RNA5SP511-201ENST00000410487 115 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 AL135786.1-201ENST00000415892 214 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 AC104332.1-201ENST00000440471 797 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 RNU7-141P-201ENST00000459304 62 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.700-201ENST00000516806 100 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 MIR5692C2-201ENST00000577959 77 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 AP003357.1-201ENST00000604497 148 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 U1.36-201ENST00000620684 176 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 ZNF658B-202ENST00000615961 3375 ntBASIC2.38□□□□□ -2.03
LIMCH1Q9UPQ0 AC245060.5-201ENST00000610778 3293 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.172-201ENST00000363765 102 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.304-201ENST00000365011 112 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 RNY4P28-201ENST00000365281 93 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 HMGN2P3-201ENST00000433603 273 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 HMGN2P5-201ENST00000436882 273 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 AC069257.2-201ENST00000441819 155 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 U8.19-201ENST00000459095 133 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 RPS26P45-201ENST00000471748 340 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-138P-201ENST00000515952 107 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 RNU7-115P-201ENST00000516433 55 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-63P-201ENST00000516690 95 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA31.25-201ENST00000517242 134 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 AC015720.1-201ENST00000565251 277 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 MIR5089-201ENST00000580047 84 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 POLR3GP1-201ENST00000594073 261 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 AC069114.2-201ENST00000604699 304 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 AL008718.3-201ENST00000610217 321 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 MIR548AY-201ENST00000617669 107 ntBASIC2.37□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.199-201ENST00000364014 102 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-1019P-201ENST00000364424 107 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 Y_RNA.785-201ENST00000384290 109 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA8-201ENST00000384574 139 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 SNORA64-201ENST00000384674 134 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 MIR597-201ENST00000384968 97 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 MTCO2P33-201ENST00000402100 465 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 MIR1298-201ENST00000408783 112 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 RNU6-651P-201ENST00000411040 105 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 AC099677.2-201ENST00000436385 175 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 MTND2P29-201ENST00000438595 412 ntBASIC2.36□□□□□ -2.03
LIMCH1Q9UPQ0 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms