Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-955P-201ENST00000410497 104 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 RNU5A-5P-201ENST00000411054 116 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 MCFD2P1-201ENST00000417812 300 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 MTND4P19-201ENST00000446659 478 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 AC079140.2-201ENST00000506193 142 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 RNU6-155P-201ENST00000516347 100 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 snoU13.31-201ENST00000607291 104 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 AC090971.5-201ENST00000621102 293 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 AC091812.1-201ENST00000432235 1948 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 RNU6-1123P-201ENST00000362347 106 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 RNU6-1175P-201ENST00000365200 107 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.535-201ENST00000384612 99 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 RNU2-61P-201ENST00000411069 191 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 PMCHL1-202ENST00000423102 261 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 STAG3L5P-204ENST00000443759 179 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 AC009474.2-201ENST00000451383 136 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 RNU6-436P-201ENST00000516171 114 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 RNU6-1337P-201ENST00000516525 95 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 RNU6-1291P-201ENST00000516591 104 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 RNU6-341P-201ENST00000516973 96 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 RN7SKP295-201ENST00000517264 153 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 RPS29P30-201ENST00000600975 111 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 PRR13P7-201ENST00000605538 430 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 AL121655.1-201ENST00000605811 308 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 AL021879.1-201ENST00000611756 288 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.47□□□□□ -2.17
CPSF3Q9UKF6 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 SNORA1B-201ENST00000362535 133 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 SNORA7.1-201ENST00000363750 139 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.267-201ENST00000364679 109 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.445-201ENST00000384168 102 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 RNU6-474P-201ENST00000384243 107 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 RNU6-136P-201ENST00000384663 107 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 MIR513A1-201ENST00000385138 129 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 MIR1302-11-201ENST00000408051 138 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 MIR1302-9-201ENST00000408365 138 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 MIR1302-10-201ENST00000408734 138 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 RPS27P16-201ENST00000425758 201 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 RNU6-475P-201ENST00000516073 104 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 AC019176.1-201ENST00000518519 225 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 AC040926.1-201ENST00000530195 238 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 MIR4498-201ENST00000577599 66 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 AP001485.1-201ENST00000604799 199 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 MIR1302-2-201ENST00000607096 138 ntBASIC1.46□□□□□ -2.18
CPSF3Q9UKF6 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.172-201ENST00000363765 102 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.460-201ENST00000384255 102 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 SNORD116-13-201ENST00000384408 92 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 RNU11-5P-201ENST00000391216 129 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 AL034345.1-201ENST00000407768 123 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 RNA5SP511-201ENST00000410487 115 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 RNU6-130P-201ENST00000411112 103 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 RPL30P13-201ENST00000418873 348 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 RPEP5-201ENST00000441137 268 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 PGBD4P5-201ENST00000445958 426 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 HSPE1P13-201ENST00000451143 297 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 RNU1-123P-201ENST00000458950 160 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 AC093852.1-201ENST00000503587 266 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 SNORA70.12-201ENST00000516084 153 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 RNU6-1096P-201ENST00000517089 102 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.772-201ENST00000606692 102 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 PART1_1.1-201ENST00000611761 217 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 AC090574.1-201ENST00000623186 233 ntBASIC1.45□□□□□ -2.18
CPSF3Q9UKF6 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 AC005592.1-201ENST00000566527 1640 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.148-201ENST00000363557 117 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 RNU6-324P-201ENST00000363957 106 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 AL354751.2-201ENST00000415471 210 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 RPS29P29-201ENST00000456396 171 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 AC004223.1-201ENST00000479840 271 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 RNU2-56P-201ENST00000516826 190 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 SUMO2P16-201ENST00000519475 264 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 MIR3660-201ENST00000584845 100 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 AL162424.1-201ENST00000602325 221 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 AL365434.2-201ENST00000607979 234 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 AC073349.3-201ENST00000617616 186 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 AL513423.1-201ENST00000621695 132 ntBASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.44□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.138-201ENST00000363462 102 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.329-201ENST00000365209 107 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 RNA5SP259-201ENST00000365541 109 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 SNORD14.1-201ENST00000365609 90 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.462-201ENST00000384268 102 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.471-201ENST00000384312 102 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 RNU6-1065P-201ENST00000384513 106 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 MIR520G-201ENST00000385064 90 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.645-201ENST00000391229 102 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 AL162725.1-201ENST00000435405 301 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 RPL30P7-201ENST00000479312 323 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 AL163540.1-201ENST00000485382 386 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 OR9P1P-201ENST00000496431 281 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 182.2 ms