Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 SNORD115-30-201ENST00000364117 82 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 RNY4P36-201ENST00000391116 96 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 RNU11-5P-201ENST00000391216 129 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 RNA5SP511-201ENST00000410487 115 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 RNU5A-5P-201ENST00000411054 116 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 RPEP5-201ENST00000441137 268 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 AL133373.1-201ENST00000497098 94 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 RNU2-12P-201ENST00000517216 168 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 AC025253.1-201ENST00000613623 543 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 AC133104.2-201ENST00000615272 193 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 U2.1-201ENST00000618978 145 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 SNORD114-27-201ENST00000363766 70 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 RNU4-38P-201ENST00000364472 129 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 RNU6-20P-201ENST00000384106 107 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 RNU6-424P-201ENST00000384367 105 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 RNY3P4-201ENST00000384428 101 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 FCF1P4-201ENST00000448326 183 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 CHEK2P4-201ENST00000450340 246 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 AL049830.1-201ENST00000468034 425 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 RNU7-12P-201ENST00000516030 62 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 RNU6-1096P-201ENST00000517089 102 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 RNU6-165P-201ENST00000517170 99 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 AP002004.2-201ENST00000531656 154 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 MIR4659A-201ENST00000580269 81 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 MIR4781-201ENST00000585250 76 ntBASIC1.16□□□□□ -2.22
VPS54Q9P1Q0 MIR562-201ENST00000384894 95 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 Z98949.2-201ENST00000440996 144 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 SUMO1P2-201ENST00000452524 304 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 RNU7-40P-201ENST00000516397 64 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 RNU6-966P-201ENST00000516479 104 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 RNU6-1337P-201ENST00000516525 95 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 RNU6-1012P-201ENST00000516606 109 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 RNU7-28P-201ENST00000516759 62 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 RNU6-1116P-201ENST00000517269 99 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 AL355375.2-201ENST00000574825 175 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 AL513534.2-201ENST00000603836 250 ntBASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.15□□□□□ -2.23
VPS54Q9P1Q0 SNORD114-7-201ENST00000362520 77 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 RNU6-199P-201ENST00000362954 107 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 RNU4-41P-201ENST00000364426 143 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 MIR628-201ENST00000385229 95 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 RNA5SP482-201ENST00000391269 118 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 AL354751.2-201ENST00000415471 210 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 AC099799.1-201ENST00000439809 192 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 RPS29P28-201ENST00000446439 141 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.632-201ENST00000459189 102 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 RNU6-917P-201ENST00000516294 104 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 RNU6-875P-201ENST00000516488 106 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 AC005176.2-201ENST00000596933 147 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 AC006380.1-201ENST00000603598 186 ntBASIC1.14□□□□□ -2.23
VPS54Q9P1Q0 MIRLET7C-201ENST00000362160 84 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.4-201ENST00000362333 112 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.361-201ENST00000365515 120 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 RNU6-1040P-201ENST00000383974 107 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 MIR520G-201ENST00000385064 90 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 SNORD78.2-201ENST00000391076 69 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 AL031003.1-201ENST00000404229 172 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 RNU2-54P-201ENST00000410299 190 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 RNU6-1199P-201ENST00000411249 104 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 RNU6-507P-201ENST00000516045 100 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 AL117336.2-201ENST00000602435 335 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 AC240442.1-201ENST00000616055 283 ntBASIC1.13□□□□□ -2.23
VPS54Q9P1Q0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.164-201ENST00000363709 102 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.172-201ENST00000363765 102 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.356-201ENST00000365475 113 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 RNU6-1080P-201ENST00000383982 107 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.446-201ENST00000384178 104 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.463-201ENST00000384271 102 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.529-201ENST00000384586 119 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 MIR653-201ENST00000385279 96 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.621-201ENST00000411065 96 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 MRPL35P3-201ENST00000421557 364 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 AC093019.1-201ENST00000443135 252 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 OR2A41P-201ENST00000473586 105 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 RNU6-947P-201ENST00000516264 106 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 U6.92-201ENST00000636464 89 ntBASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
VPS54Q9P1Q0 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 MIR96-201ENST00000362288 78 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.187-201ENST00000363918 113 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 RNU6-324P-201ENST00000363957 106 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 SNORD116-13-201ENST00000384408 92 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 SNORD41-201ENST00000386967 70 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 AL162725.1-201ENST00000435405 301 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 RPS4XP11-201ENST00000446897 772 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 FGF7P4-201ENST00000509595 295 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 RNU6-436P-201ENST00000516171 114 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 AC093027.1-201ENST00000546698 429 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 AC090049.2-201ENST00000550377 109 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms