Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC018448.1-201ENST00000552843 316 ntBASIC-0.1□□□□□ -2.43
SCN3AQ9NY46 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 RNY1P16-201ENST00000363063 111 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 RNU6-580P-201ENST00000365159 107 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 PDCL2P1-201ENST00000419302 352 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 AL353572.1-201ENST00000442490 417 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 RNU7-180P-201ENST00000459240 63 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 MTCO2P30-201ENST00000503662 364 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 CCDC34P1-201ENST00000507441 517 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 AC046134.1-201ENST00000514454 666 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 MTATP6P9-201ENST00000515039 680 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 RNU6-1332P-201ENST00000516666 104 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 AC073534.2-201ENST00000620377 381 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 SNORD118-201ENST00000363593 134 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 SNORD14.1-201ENST00000365609 90 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 MIR214-201ENST00000385214 110 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 MTND3P16-201ENST00000452205 344 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 AC112693.2-201ENST00000556538 232 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 MIR548AR-201ENST00000582191 57 ntBASIC-0.11□□□□□ -2.43
SCN3AQ9NY46 RNU6-454P-201ENST00000364292 107 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 RNU4-9P-201ENST00000364951 139 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 MIR610-201ENST00000385139 96 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 MTCO2P33-201ENST00000402100 465 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 ELOCP21-201ENST00000412558 336 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 BX295541.1-201ENST00000417774 250 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 MTND2P9-201ENST00000422293 931 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 MTCO1P20-201ENST00000425366 358 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 MTCO2P19-201ENST00000427513 598 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 USP9YP16-201ENST00000430287 407 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 AL353997.1-201ENST00000432936 108 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 USP9YP23-201ENST00000455085 407 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 RNU7-66P-201ENST00000459469 62 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 AC104692.1-201ENST00000472406 90 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 AC091144.1-201ENST00000519573 138 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 MTND2P38-201ENST00000522536 667 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 AC093027.1-201ENST00000546698 429 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 AL158211.1-201ENST00000566763 763 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 MIR4768-201ENST00000585270 74 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 AL357078.3-201ENST00000607528 618 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 MIR6079-201ENST00000635807 62 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 AC099654.12-201ENST00000639868 649 ntBASIC-0.12□□□□□ -2.43
SCN3AQ9NY46 SNORD113-7-201ENST00000363762 77 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 RNU6-1322P-201ENST00000364309 107 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 RNU6-996P-201ENST00000365438 107 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 SNORD37.1-201ENST00000390968 65 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 ZNF736P8Y-201ENST00000451913 669 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 RNU7-102P-201ENST00000458948 62 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 RNU7-159P-201ENST00000459284 62 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 MTND3P7-201ENST00000474435 343 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 RNU6-758P-201ENST00000516292 89 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 MIR4300-201ENST00000581016 96 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 SNORD95.1-201ENST00000364099 68 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 RNU6-442P-201ENST00000383968 104 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 RNU6-281P-201ENST00000384212 103 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 SNORA20B-201ENST00000384220 132 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 SNORA32.3-201ENST00000384772 121 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 MIR450B-201ENST00000401182 78 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.714-201ENST00000517065 90 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 AC090897.1-201ENST00000580909 226 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 AC040904.1-201ENST00000590850 223 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 RNU6-89P-201ENST00000606519 100 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-0.13□□□□□ -2.43
SCN3AQ9NY46 SNORD114-5-201ENST00000362928 70 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 RNU6-131P-201ENST00000391144 107 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 Z95118.1-201ENST00000421372 247 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 CYCSP46-201ENST00000423569 204 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 MTND1P27-201ENST00000451117 902 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 SUMO1P2-201ENST00000452524 304 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 AC010598.1-201ENST00000510378 103 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 POLR3GP2-201ENST00000588366 668 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 uc_338.4-201ENST00000616635 176 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.167-201ENST00000363735 109 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.303-201ENST00000364998 94 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 RNU6-128P-201ENST00000383976 107 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 MCFD2P1-201ENST00000417812 300 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 AL137792.2-201ENST00000443484 235 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 UQCRBP2-201ENST00000447827 297 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 RNU6-261P-201ENST00000459506 102 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 AC022616.4-201ENST00000522985 181 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 AC138869.1-201ENST00000568623 124 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 MIR4493-201ENST00000584016 73 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 AC015726.2-201ENST00000620112 122 ntBASIC-0.14□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.533-201ENST00000384596 114 ntBASIC-0.15□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 334 ms